@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : HDAC9_HUMAN: (2017-06-15 )
MHSMISSVDVKSEVPVGLEPISPLDLRTDLRMMMPVVDPVVREKQLQQELLLIQQQQQIQKQLLIAEFQKQHENLTRQHQAQLQEHIKELLAIKQQQELLEKEQKLEQQRQEQEVERHRREQQLPPLRGKDRGRERAVASTEVKQKLQEFLLSKSATKDTPTNGKNHSVSRHPKLWYTAAHHTSLDQSSPPLSGTSPSYKYTLPGAQDAKDDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGNVVTSFKKRMFEVTESSVSSSSPGSGPSSPNNGPTGSVTENETSVLPPTPHAEQMVSQQRILIHEDSMNLLSLYTSPSLPNITLGLPAVPSQLNASNSLKEKQKCETQTLRQGVPLPGQYGGSIPASSSHPHVTLEGKPPNSSHQALLQHLLLKEQMRQQKLLVAGGVPLHPQSPLATKERISPGIRGTHKLPRHRPLNRTQSAPLPQSTLAQLVIQQQHQQFLEKQKQYQQQIHMNKLLSKSIEQLKQPGSHLEEAEEELQGDQAMQEDRAPSSGNSTRSDSSACVDDTLGQVGAVKVKEEPVDSDEDAQIQEMESGEQAAFMQQPFLEPTHTRALSVRQAPLAAVGMDGLEKHRLVSRTHSSPAASVLPHPAMDRPLQPGSATGIAYDPLMLKHQCVCGNSTTHPEHAGRIQSIWSRLQETGLLNKCERIQGRKASLEEIQLVHSEHHSLLYGTNPLDGQKLDPRILLGDDSQKFFSSLPCGGLGVDSDTIWNELHSSGAARMAVGCVIELASKVASGELKNGFAVVRPPGHHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSGAPNEVGTGLGEGYNINIAWTGGLDPPMGDVEYLEAFRTIVKPVAKEFDPDMVLVSAGFDALEGHTPPLGGYKVTAKCFGHLTKQLMTLADGRVVLALEGGHDLTAICDASEACVNALLGNELEPLAEDILHQSPNMNAVISLQKIIEIQSMSLKFS

Atome Classification :

(61 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9F4_C_10(4CBT)

[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




OTF_A_3(5A2S)
HDAC4_HUMAN
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




OTF_B_7(5A2S)

[Raw transfer]




9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]




TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]




5XA_A_7(4ZUP)
APHA_MYCRA
[Raw transfer]




TSN_C_18(3C10)

[Raw transfer]




TFG_B_12(2VQQ)

[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




TSN_A_4(5EEF)
?
[Raw transfer]




TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]




SHH_C_18(3C0Z)

[Raw transfer]




TFG_B_12(2VQO)

[Raw transfer]




6XA_A_5(4ZUQ)
APHA_MYCRA
[Raw transfer]




FMT_B_7(5EEM)
?
[Raw transfer]




6XA_B_12(4ZUQ)
APHA_MYCRA
[Raw transfer]




TSN_A_5(5EEK)
?
[Raw transfer]




5XA_B_16(4ZUP)
APHA_MYCRA
[Raw transfer]




XS6_A_6(4ZUO)
APHA_MYCRA
[Raw transfer]




FKS_D_6(5EFH)
?
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]




NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]




5OG_B_6(5EEN)
?
[Raw transfer]




5OG_A_10(5EEN)
?
[Raw transfer]




5OK_D_5(5EFB)
?
[Raw transfer]




FKS_A_6(4ZUM)
APHA_MYCRA
[Raw transfer]




NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]




XS6_B_12(4ZUO)
APHA_MYCRA
[Raw transfer]




TFG_A_8(2VQJ)

[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




FKS_B_13(4ZUM)
APHA_MYCRA
[Raw transfer]




FKS_A_13(5EFH)
?
[Raw transfer]




NU7_C_18(3ZNS)

[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




5OJ_A_6(5EF7)
?
[Raw transfer]




TSN_B_10(5EEF)
?
[Raw transfer]




5OJ_B_10(5EF7)
?
[Raw transfer]




LBH_B_11(5EF8)
?
[Raw transfer]




SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]




SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]




HA3_B_13(2VQV)

[Raw transfer]




HA3_A_4(2VQM)

[Raw transfer]




LBH_A_6(5EF8)
?
[Raw transfer]




SS9_A_3(4ZUN)
APHA_MYCRA
[Raw transfer]




SS9_B_13(4ZUN)
APHA_MYCRA
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




MCM_E_15(5EFN)
?
[Raw transfer]




MCM_F_10(5EFN)
?
[Raw transfer]




MCM_A_10(5EFK)
?
[Raw transfer]




25 PsiBlast_CBE 82.4474%-112 - C6 -4CBY -
27 PsiBlast_CBE 82.3374%-109 - C6 -4CBY - HDAC4_HUMAN
4 PsiBlast_PDB 82.0374%-111 - C6 -4CBY - HDAC4_HUMAN
26 PsiBlast_CBE 81.9974%-111 - C6 -4CBY - HDAC4_HUMAN
5 PsiBlast_PDB 81.3574%-109 - C6 -5A2S 7.3 HDAC4_HUMAN
24 PsiBlast_CBE 81.1374%-110 - C6 -5A2S 7.4
1 PsiBlast_PDB 80.7474%-109 - C6 -2VQJ 3.8
2 PsiBlast_PDB 78.7974%-112 - C6 -2VQM 3.3
36 PsiBlast_CBE 78.1467%-106 - C6 -3C0Z 3.0
30 PsiBlast_CBE 78.0767%-111 - C6 -3ZNS 8.2
22 PsiBlast_CBE 77.8274%-104 - C6 -4CBT 7.5 HDAC4_HUMAN
34 PsiBlast_CBE 77.6767%-110 - C6 -3C10 5.6
29 PsiBlast_CBE 77.6673%-111 - C6 -2VQO 4.8
32 PsiBlast_CBE 77.6167%-108 - C6 -3ZNR -
3 PsiBlast_PDB 77.3674%-106 - C6 -2VQQ - HDAC4_HUMAN
38 PsiBlast_CBE 77.3267%-108 - C6 -3C0Y -
6 PsiBlast_PDB 77.1473%-110 - C6 -2VQO 4.4 HDAC4_HUMAN
23 PsiBlast_CBE 77.0374%-110 - C6 -2VQQ 4.5
28 PsiBlast_CBE 76.8873%-112 - C6 -2VQV 4.0
21 PsiBlast_CBE 76.6774%-108 - C6 -4CBT 7.6
7 PsiBlast_PDB 75.9273%-112 - C6 -2VQV 4.2 HDAC4_HUMAN
31 PsiBlast_CBE 75.6267% -29 - C6 -3ZNS 7.7 HDAC7_HUMAN
10 PsiBlast_PDB 74.7167% -7 - C6 -3C10 5.6 HDAC7_HUMAN
9 PsiBlast_PDB 74.0167% -6 - C6 -3C0Z 3.2 HDAC7_HUMAN
11 PsiBlast_PDB 72.9267% -10 - C6 -3ZNR 8.1 HDAC7_HUMAN
35 PsiBlast_CBE 72.5767% -12 - C6 -3C10 5.6 HDAC7_HUMAN
37 PsiBlast_CBE 72.3867% -12 - C6 -3C0Z 3.1 HDAC7_HUMAN
12 PsiBlast_PDB 72.3167% -11 - C6 -3ZNS 8.5 HDAC7_HUMAN
149 HHSearch 64.7037% -62 - C6 -5G0G 5.5 ?
150 HHSearch 64.1544% -52 - C6 -5G0H 5.5 ?
14 PsiBlast_PDB 63.8943% -32 - C6 -5G0J 5.2 ?
13 PsiBlast_PDB 62.6843% -28 - C6 -5G0H 5.6 ?
58 PsiBlast_CBE 61.4036% -45 * C6 *5EEF 5.9 ?
51 PsiBlast_CBE 60.9346% -29 - C6 -5EFK 3.5 ?
19 PsiBlast_PDB 60.9246% -29 - C6 -5EF7 3.6 ?
16 PsiBlast_PDB 60.7646% -28 - C6 -5EEK 5.9 ?
18 PsiBlast_PDB 60.7446% -29 - C6 -5EEN 5.3 ?
47 PsiBlast_CBE 60.7046% -27 - C6 -5EF7 3.9 ?
45 PsiBlast_CBE 60.6346% -29 - C6 -5EFB 4.2 ?
20 PsiBlast_PDB 60.5546% -27 - C6 -5EF8 6.0 ?
46 PsiBlast_CBE 60.5346% -30 - C6 -5EF8 5.6 ?
56 PsiBlast_CBE 60.4336% -44 - C6 -5G0G 5.8 ?
42 PsiBlast_CBE 60.2146% -29 - C6 -5EFH 3.4 ?
17 PsiBlast_PDB 60.1846% -29 - C6 -5EEM 3.5 ?
48 PsiBlast_CBE 60.1646% -31 - C6 -5EEN 5.5 ?
53 PsiBlast_CBE 60.0045% -29 - C6 -5EFN 3.1 ?
158 HHSearch 59.9535%-109 - C6 -5JI5 2.9 ?
57 PsiBlast_CBE 59.9536% -43 - C6 -5EEF 5.3 ?
52 PsiBlast_CBE 59.7645% -28 - C6 -5EFN 3.7 ?
41 PsiBlast_CBE 59.3346% -29 - C6 -5EFH 3.6 ?
79 PsiBlast_CBE 51.5332% -36 - C6 -5JI5 2.9 ?
91 PsiBlast_CBE 42.9733% -52 - C6 -4ZUO 3.4 APHA_MYCRA
86 PsiBlast_CBE 42.9533% -52 - C6 -4ZUQ 2.6 APHA_MYCRA
90 PsiBlast_CBE 42.7133% -52 - C6 -4ZUO 3.4 APHA_MYCRA
87 PsiBlast_CBE 42.7133% -53 - C6 -4ZUQ 2.8 APHA_MYCRA
92 PsiBlast_CBE 42.6733% -52 - C6 -4ZUN 2.6 APHA_MYCRA
88 PsiBlast_CBE 42.5833% -52 - C6 -4ZUP 2.6 APHA_MYCRA
93 PsiBlast_CBE 42.5633% -51 - C6 -4ZUN 2.7 APHA_MYCRA
94 PsiBlast_CBE 42.5533% -52 - C6 -4ZUM 4.0 APHA_MYCRA
95 PsiBlast_CBE 42.3133% -53 - C6 -4ZUM 3.8 APHA_MYCRA
89 PsiBlast_CBE 42.3033% -52 - C6 -4ZUP 2.7 APHA_MYCRA