@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_03_0330: (2018-03-07 )
MLPADDELAASEGSSHRQRQPQCRSGIEGDSTSSSRNDAGNSVNSGSRSSSGGGDRGATARGPFVDMEGSSGEANVPIGRTLSDDGQPQNARPRSEDPPAMASLLSRHCLDDAVAVDTVEGGDSTDNVDDVRPGSPFLHRRNRLRGPPNATVMAPDAASRRAAGSRHSSKVDLLEAQEDPPMLSSRQRLLRPVSSDSIVFSIVSSNSSGDELDGQGSEAARARLHAGDGDDVSSLLPSTSALSGPASSNALLCPRTVYDADDNGSGTGKDGVDSGADSMHSSPVAVTLWGVDRDLRRKRIKKVSHYILGPLLGEGSYGVVRDCIDLNTDNADRRFSRCAIKIINGNYAKLDTSAAKPSKASSTLAAATEDGTDGGARAGTRGTLKRTSGIQYRREEDLKRQETFQREMRNLQRFHSKNIIRALDAFTRYSKEYVVMPIAICSLRQLVQQMLRTRWREAVREWRRAQRRLQRKQRHKRGHFATSVSGDQTQTPSQPSPWLPMVPSAVEELDMDELAFMTDGERDGGDDTDGISASQPHSSSDGDDGVAAERDSEASMVDHDEESQRQHSATSSVTATAVGGRVAAAAAAVSERGPSGQSRLPPRVAFNGASSTATTTHIIDRYTSHSNGSPPSQSPRQRSGEHFPTFAGGHHHGGGNGSWGDDVSDGSSASTTGAHNGITVMSATPPALSTAELPMECDDLVGSGANGADGRPPATVSPAPAPAASTQHIRPHMSLPVCSPTLLKGIFYQLMSGVAYLHQQHLAHNDIKPSNVLLFEDGTVKLADLGSVSDTYNDQGSPLCASPELCKYFYGAATPPASFSQSAQHVGRDAAQSSDMWCCGLMLYYLITGKPGPLPVQLRYFRALNSKQAHQPFRPFAPHGDSGRAALPPVVTRYQLYREIAQQTTPVDLGGLPDMVAPDVGNDVLLSSSPMLAKGEAPHGDSVDDAATSSYPPNGVRHLLAGLLELDPLRRLTAEQALRHPWLRMAFRSKTSETSSSNTISQTSAPNSNGGQQDDAQNQQQQLKAPSKQAMEEAIQRDVARRVMESRHVQHMLRLDRQRHLQFVADCCNMLNLAIPPEIIKVHPEAPYHEDNGASVCSSSPPALQVYRPNSMAAAAAAVSGRNTRLGRPSAGANAPGPRGSTGGSEWSVTSRNSHNSAVAGIVLRDDMRPRVMPPGCVDTDLFLPPSEEDYYEQKSGKAEFDVRVLRRKPLLMAQLDEYFHNVVLVQCGYRTGPDPNYQAMRLRAVPIEDESGGGGSGGSQGGTQQPAVMILPGACGNVCRRSTSLGLSSMPVAAALAGNSSDDGGTDGANSRGGSVDVWAAGPRHNPRTHVDDHREVVAAASSAGAVAGRGANLSRTSAAAGRSLIGTSPPGAAAPSRPSAAGGTGSRAPDAGSHPILYCGRGSTGGSGNGSASRRVAGRGRGRGQRDASESPSEEEANVAMRESSKCLCGLV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_4(4KRC)
PHO85_YEAST
[Raw transfer]
51 Fugue 71.0416% -17 - C1 -3C4Z - RK_BOVIN -
20 PsiBlast_PDB 62.5126%-116 - C1 -5ACB - CDK12_HUMAN -
19 PsiBlast_PDB 61.8526%-122 - C1 -4CXA - CDK12_HUMAN -
17 PsiBlast_PDB 58.5226%-119 - C1 -4UN0 - CDK12_HUMAN -
1 PsiBlast_PDB 56.3529% -51 - C1 -2PK9 - PHO85_YEAST -
45 Fugue 56.2119% 21 - C1 -4XHG - ? -
3 PsiBlast_PDB 55.7529% -49 - C1 -4KRC 5.7 PHO85_YEAST
2 PsiBlast_PDB 54.3029% -49 - C1 -2PMI - PHO85_YEAST -
24 HHSearch 53.5018% 5 * C1 *4YZC - ERN1_HUMAN -
9 PsiBlast_PDB 53.4324% -59 - C1 -5G6V - CDK16_HUMAN -
46 Fugue 51.8718% - - C1 -3H4J - SNF1_SCHPO -
50 Fugue 51.4715% -25 - C1 -2RIO - IRE1_YEAST -
13 PsiBlast_PDB 51.3725% -28 - C1 -4AU8 - CDK5_HUMAN -
4 PsiBlast_PDB 50.9329% - - C1 -4KRD - PHO85_YEAST -
22 HHSearch 50.2121% 17 - C1 -3SDJ - IRE1_YEAST -
21 HHSearch 49.4821% 2 - C1 -2RIO - IRE1_YEAST -
8 PsiBlast_PDB 48.6124% -58 - C1 -3MTL - CDK16_HUMAN -
23 HHSearch 47.9118% -23 - C1 -4YZ9 - ERN1_HUMAN -
40 HHSearch 45.9221%-100 - C1 -2VD5 - DMPK_HUMAN -
29 HHSearch 45.4522%-127 - C1 -2X4F - MYLK4_HUMAN -