@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_07_0320: (2018-03-07 )
MGMEHYTKVKDLGGTNGAFLARDRQQPDRLVVIKRLADGTQGIEELNASLRLRHPHIVRFLESFVYNGSLFVVMSYESGGDLDGLFHYLTQSHRTPTTHTLLLWFVQLLEALAYCHDSHVIHRDIKPSNILVSEDTKVLYLGDFGSAKTLSTSNVTSTFVGSPMWISPEVLLGTSYGYAADVWSMGCVFYEMATLRKPFSAPSFAHLVQQITWGHITPLPAHVAQEVRSIIHSMLVLDPAQRVTAKAALEVARGALGRAEELRQASPSPLRPAGMPSKSSATSLPPRLTSPPEVVAHQPRQTPPPPSPPPSQPYSSCPSASSTTPPRKGGLTQTAAPPVPTPSDSTPPASSTVSDPLLVVASEAKAGEDPTPHGSPPSAAAPEFSSQAAVVKQRPGASSPASILEEPTASPTPQPPVGGAPASMQPPAVLVVAAAPPAPAAKKEATVRDKGAPAASPVVDAQLRVPQQMVLQISTTGFSKPAQRKKAAPKRKNVATHKAGPLPLRQRVPSVPAPTSPPTEAPKFVRQLSTDSLSSRRAAELFAPSRGSSGPTKVVVKAVPPAHVAKRALAVAGNRENPPRVPKESPTREARALQKAPLKPALQLPPKPAAPPSDAAPADQWFDQRMRDLCAMENYLHQHRVDDDKVLQTYDARRHKEEQQCESATPGTRAAGRPPAARRRSPATKFASPAQPPGVLVMTPPRHRHLSEGIPAPPALPAAQQQQQRQQRPGAASPFVRQASYVCQGLHPACRSESRQSSLSSTFNGRQASNARARARVSLEEQLKNEEGRVIAREKREAERQRMKELISAQRAAAKQQKRKARKDDAVDVQIVLPDRLHYAPDSAVPAD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_3(4GV1)
AKT1_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]
51 Fugue 71.6129% -15 - C1 -5KCV - AKT1_HUMAN -
24 HHSearch 64.9730% -24 - C1 -1J1B - GSK3B_HUMAN -
54 Fugue 64.3823% 14 - C1 -4AW2 - MRCKA_RAT -
41 HHSearch 61.7929% -37 - C1 -4GV1 Error AKT1_HUMAN
31 HHSearch 58.5328% -23 - C1 -3C0I - CSKP_HUMAN -
6 PsiBlast_PDB 57.3632% -6 - C1 -2W5A - NEK2_HUMAN -
32 HHSearch 56.0828% -23 - C1 -3C0G - CSKP_HUMAN -
49 Fugue 53.1718% 2 - C1 -1KOB - ? -
1 PsiBlast_PDB 51.0434% -13 - C1 -4APC - NEK1_HUMAN -
44 HHSearch 50.0928% -7 - C1 -2BDW - KCC2D_CAEEL -
2 PsiBlast_PDB 50.0634% -14 - C1 -4B9D - NEK1_HUMAN -
18 PsiBlast_PDB 50.0532% -2 - C1 -2XNN - NEK2_HUMAN -
20 PsiBlast_PDB 49.7532% 6 - C1 -2XNP 8.5 NEK2_HUMAN
17 PsiBlast_PDB 49.5732% -8 - C1 -2XNM - NEK2_HUMAN -
10 PsiBlast_PDB 49.4532% -19 - C1 -2XK6 - NEK2_HUMAN -
11 PsiBlast_PDB 49.1432% -3 - C1 -2XK7 - NEK2_HUMAN -
12 PsiBlast_PDB 49.1032% -0 - C1 -2XK8 - NEK2_HUMAN -
27 HHSearch 48.6924% -28 * C1 *2Y7J - PHKG2_HUMAN -
15 PsiBlast_PDB 48.3432% -3 - C1 -2XKF - NEK2_HUMAN -
19 PsiBlast_PDB 48.2232% 4 - C1 -2XNO 2.8 NEK2_HUMAN