@TOME V2.3
(Mar 2018)

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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_11_0060: (2018-03-08 )
MAKEVLNNIQPCLPSGMPCMMQIVSTVAAIVECSIDPPSQQQNGKAQGEPKVLSAGQSSSLTPVPLKAKEALKLSLFAFHLLKKCCHMKNPESNEEAASNFDWLVKYLLDSVSIFPEAARSFFPWNGISFSRAFAANIESALALPPDQQGLPKWLWEDEGRNLRIQQGSEGRYRNEFIQQRLLGTGGFAPVYVCRKKIDGRLYAIKKIAMTEAQSEKVLREVQTLAALNHKNIVRYYDAWVEDGCDEDLREFVDTDAEDEEDEKMKHGGKMLSPQSRAVARASLSSDTDCTSSLYSSSVEKSSSADTSEEDHESGESCSDSGDARSDVKMHEPKGRRPSMNFQTLYIQMELCSARSLRHLIDESDSSDSGGIFSSANGEKVAVSILRQLLSVTAHTHRERIVHRDLKPENVLFEMESNHNSEAGTIRVADFGLARVMSGVKRITSVLDVDEVNTPTNLVSANYPTGNCGSVLYCAPEQEKGLEYDYKVDEFSIGMIAFEMWLAIAGKGFRERFTIMGEVWRTGKLPQWFARWNPTMADIIEKLLEPDPRRRTTCEAVLSTAELPGDPADLTSALDTVDRYGERIAGRIIQKIQRIGSEFRKPSRAFRDDAQFVGSSQCTDVVQAVQVIGMLHGAVPVALFDPTVAMNPKLAEMNVDCVVDSSGRSFAYSALPYFATASFLGMQENSAIGSFYQFYHRARSYVIFTTPLPHHGVFNECVLEPLLSLCHLLAFTETTEPMEVIVSHVHWLKTVFPAEIGTRSPPPALCHLRSEILTADQVGHAISSITESLCAAGLLLCDERDEYIKKFTMAVVDVINTFAKHMNTHLTLVMDPALQPSDLLVARKALETGIIFECRSTRGAVPLAFGCFLDNFTTNCTVVNPDISAFSVVVDVQHLLNVGKHVHVTWRENLLLDGVAAKRHDLYSLTQLPHVVEAAIQLWKGNIRACIRADTDARALARALKAKQIRWLLVDGKRIVAVSTNQQGKVSGHGGDIALDDLRQTVRSLSVKEKSTSSANIDVQFLSGKVETRTADKIVELFSTMMTPPPSTVVVVNTDVKRIHECLEQFNESAPDSPPETLAEPTLARWMKANAAASSVVPVYSLTEGKIVFFVNYKRFKVSGKKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0WH_A_3(4G31)

[Raw transfer]



ANP_A_5(1ZY5)
GCN2_YEAST
[Raw transfer]



3Z3_A_2(4X7K)

[Raw transfer]



GOL_A_4(5O2C)
WNK3_HUMAN
[Raw transfer]



ATP_A_7(1ZYD)
GCN2_YEAST
[Raw transfer]



STU_A_2(4MVF)
CDPK2_PLAFK
[Raw transfer]



1PE_A_2(4B4L)
DAPK1_HUMAN
[Raw transfer]



DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]
42 HHSearch 75.7835% 10 - C1 -4G31 11.2
39 HHSearch 74.9833% -5 - C1 -4X7K 12.7
28 HHSearch 72.5428% 0 - C- -2WEL - KCC2D_HUMAN -
1 PsiBlast_PDB 70.5628% - - C1 -3QD2 - E2AK3_MOUSE -
35 HHSearch 67.2025% -33 - C1 -1KOB - ? -
23 HHSearch 66.6020% -74 - C1 -1TKI - TITIN_HUMAN -
49 Fugue 66.4918% -40 - C1 -1TKI - TITIN_HUMAN -
25 HHSearch 65.7226% -3 - C1 -2X0G - DAPK1_HUMAN -
27 HHSearch 65.6225% -35 - C1 -2X4F - MYLK4_HUMAN -
36 HHSearch 65.5526% -18 - C1 -2Y7J - PHKG2_HUMAN -
38 HHSearch 64.7926% -6 * C1 *4B4L 2.0 DAPK1_HUMAN
37 HHSearch 64.7126% -24 - C1 -2Y7J - PHKG2_HUMAN -
40 HHSearch 62.3426% -14 - C1 -5O2C 2.4 WNK3_HUMAN
24 HHSearch 62.2223% -24 - C1 -3C0G - CSKP_HUMAN -
26 HHSearch 61.1023% -21 - C1 -3C0I - CSKP_HUMAN -
57 Fugue 61.0212% - - C1 -3QA8 - ? -
41 HHSearch 59.9223% -40 - C1 -5J5T - M4K3_HUMAN -
33 HHSearch 59.1621% -35 - C1 -4XBR - INKA1_HUMAN (first) -
2 PsiBlast_PDB 58.4224% -23 - C1 -3UIU - E2AK2_HUMAN -
8 PsiBlast_PDB 58.2727% -99 - C1 -1ZXE - GCN2_YEAST -