@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_17_0810: (2018-03-09 )
MLSSTDSPRAHTSPTESRAAPNGLTEADTASPTRRESLVPQLAPSCVITPLQGSAASPRTLSCSRGSSEKHLNEADASHLQHPLSPNALSTQLTPSTPAKQRLLCRGAPPPSLQQQLSPALPSLARRLWNQFPVREHPSPPRGKNASDVGAEERAAAQFSMLDVFNVGNDASPQLSTLLGSPTRRSENSPALERVGSSQSSLFSTPMTRRLQGCMTKESPDYRALPAPHTSPPPLTFSTADLASVDSDKRMRNVHRRQDGWVRSPKADCRASACRQPHPGGHYSTPVASLAPPPVPQHGKISPHEPTRAASGRTASRSIGRKRDGYTRSIARFPSVSAAATPFRDLDQHLPSESAFFPTSSSEGRPHRYTVSPAKPMSPMRESKSRSTGRSPSSDAVGGARHFSSSVEKASVFKELLALDHDVVCASSEATASSRRCGRRRYSANTSPPHDGDYIGDALTASADQRMFLQIKRQSKFWPSDNTSCRFSNAVIGSTARRGVRRSSSSHTADQGGRSASSMPLSAVMGVIPREDFVHRLGGDSMQSLSSLPQLHQQQLQQLPASPSAPPLPRARTLMASIMHDHAPCSSLRPPELTPAAMEWRESAEMLVDSCCYTPSIVVEQQQQQQLLLTPLMDQPAEHSTASVQERGSLGHRVSLCSRHRRSVANGSISTARSSSSSNASRRCSCSSAPPAPAHANAESSMSLKVPALVPPPPWTPRDALYWMRNRLTLQEQEEILGYDVVYYCGPPGQPRTACGVTDRATPPPSSHHTSKETASVSSLPKNKEEVVSFTAPSSSYFPITLGMHICFRYEVLEVLGIGTFSIVVRAVDHAASPLSPERHCALKLIRRELLYQNAAQAEWAICERLKECCAAMHPCSGSNFREDASGAAADYRAGASVHRRPSASLPSALPWLSMADQRTLLFGSVLTPRSRFEYRGYHVIVFPLLGFSVRDVVELRRESREAKAGHAVSASSSLLLASAPPSQAGGQAAGTLPTKVVGSVLAQLAHALHFMHHCAHVLHGDIKPENIVFVDRSVSGRSSSINGHLAESGGAASQQPPPRPPSQQPLLQAPLPHNGDAGALPTSLSMHPFHRVCLGFPSSSLSNTAAPPPPVTHSGTVPRRSHATEHLERRFGADVGDRESPSSSTSTCSSSLPCLRAPHPPPRNIEIVDGPDRGATIMSCGHSVQHPGGEVASSSQRCPSGGDLHDQCITDGASVSLAGRSLCMTGSRTGVLTPSPHSTSTGAGLVEGSVGYVAACTTLSEAPRCSSGSSREVSPSYTTRSGHDSGGGDEASSTVTPSALTRLTYALPHAMAASTAATTSSRIALIDLGHAHHILPGTTATAFPLQSPSYRCPEMSLRLPYTTAIDMWSVGCVLYELHTGHALFPDVCDDATMLQSAVRVLGMPDAAFLTTVKTCWRKYKQHKASTVRASARAQGDVTSSDTGSQKVQLHLRQAHPQERRLAVDGEDANQDEEAIIVERCWREFIQVLNDAAGHQREHERRLKGQQESSTPPVMENSQRSPRGAALPLQNGSGCTTTWETAEQLALLKVMFPGGQVHESDQCFFLPSKCDWHRYAWVDFLLGCLYWDAGERLTATEAQVHPYLASSFSPEVAAATAVTANNAAASSGMDRKDAVDDTTMSASGVSAASSDAVPRRVVAPTIRPTHCSGLHYLRRHPLTARLLNSAAEAASQPSSPHGSDSTASDDAAPLLAPLLMNPSAIVLFELPSSNRAAPSARMWKEHQQHLSHCYDSALDIHSMLQTPAERLALSPYHNSDHRRNLFDRTGSYPFRVVFSESDQGTESSVVVSAESSVRGNLAGTQKPRNDDQTSAVMVLPLN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]



EDO_A_6(2WEL)
KCC2D_HUMAN
[Raw transfer]
21 HHSearch 82.0226%-123 - C1 -5LXC - DYRK2_HUMAN -
22 HHSearch 81.2026%-127 - C1 -4AZF - DYRK2_HUMAN -
37 HHSearch 62.8022%-163 - C1 -4YLL - DYR1A_HUMAN -
41 HHSearch 60.6722%-163 - C1 -4YU2 - DYR1A_HUMAN -
53 Fugue 56.3114% 31 - C1 -5KCV - AKT1_HUMAN -
50 Fugue 56.1612% 23 - C1 -2ACX - GRK6_HUMAN -
34 HHSearch 51.9027%-121 - C1 -4AU8 - CDK5_HUMAN -
46 Fugue 50.4214% 3 - C1 -1TKI - TITIN_HUMAN -
51 Fugue 50.3312% 11 - C1 -3C4Z - RK_BOVIN -
33 HHSearch 49.0824% -95 - C1 -2QR8 - -
29 HHSearch 48.5126% -68 - C1 -2WEL 3.1 KCC2D_HUMAN
48 Fugue 47.6015% -18 - C1 -4DN5 - M3K14_HUMAN -
24 HHSearch 46.9725%-121 - C1 -1TKI - TITIN_HUMAN -
40 HHSearch 45.3924%-103 * C1 *3C0G - CSKP_HUMAN -
38 HHSearch 45.3024%-105 - C1 -3C0I - CSKP_HUMAN -
36 HHSearch 43.9428% -24 - C1 -1UNL - CDK5_HUMAN -
44 HHSearch 41.7126% -78 - C1 -1KOB - ? -
35 HHSearch 41.4622% -50 - C1 -2X0G - DAPK1_HUMAN -
27 HHSearch 39.7521% -52 - C1 -4B4L - DAPK1_HUMAN -
43 HHSearch 38.9923%-127 - C1 -1UA2 - CDK7_HUMAN -