@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_19_0140: (2018-03-09 )
MAAISTKELMEVTLGKKLGAGSFGSVFVGVLPSGNFVAVKILELSDDAPSNTEVEIHRKMVHPNIIRYLYSRIDLESTPKKLYVYLEFVTGGSVTSLMKSLPNGCLPYAVVRVYARHMFQGLEYLHSNQVAHRDIKGDNVLISMDTGTAKLADFDQAKIMNTHGTLRKAATATLAGTPYWMAPEVITDEDGYDPFKADIWSAGCTVAEMITGRAPWTPMPNVMHIMNKLALSTGWPDAVPKDAKELGSQDAYDFLDLCFQRDVSKRPPAATLLKHVFLRV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X4Z_A_3(4O0R)
PAK1_HUMAN
[Raw transfer]




DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




4PV_A_3(4ZLO)
PAK1_HUMAN
[Raw transfer]




GOL_A_4(4ZLO)
PAK1_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




12 PsiBlast_PDB 83.3035% -31 - C1 -4EQC - PAK1_HUMAN -
2 PsiBlast_PDB 82.2836% -39 - C1 -4ZJJ - PAK1_HUMAN -
7 PsiBlast_PDB 81.6935% -28 - C1 -1YHW - PAK1_HUMAN -
15 PsiBlast_PDB 81.0835% -27 - C1 -5DEW - PAK1_HUMAN -
10 PsiBlast_PDB 81.0535% -29 - C1 -4DAW - PAK1_HUMAN -
16 PsiBlast_PDB 80.8035% -29 - C1 -4O0R 6.8 PAK1_HUMAN
8 PsiBlast_PDB 80.8035% -29 - C1 -3FXZ - ? -
19 PsiBlast_PDB 80.7034% -26 - C1 -3Q53 - PAK1_HUMAN -
1 PsiBlast_PDB 80.5736% -36 - C1 -4ZJI - PAK1_HUMAN -
17 PsiBlast_PDB 80.1035% -28 - C1 -4O0T - PAK1_HUMAN -
9 PsiBlast_PDB 79.7635% -27 - C1 -3FY0 - PAK1_HUMAN -
11 PsiBlast_PDB 79.5035% -23 - C1 -5DFP - PAK1_HUMAN -
20 PsiBlast_PDB 78.4835% -27 - C1 -1YHV - ? -
6 PsiBlast_PDB 77.7235% 0 - C- -1F3M - ? -
14 PsiBlast_PDB 77.4235% -30 - C1 -5DEY - PAK1_HUMAN -
13 PsiBlast_PDB 77.3034% -32 - C1 -3Q4Z - PAK1_HUMAN -
4 PsiBlast_PDB 74.6835% -28 - C1 -4ZY6 - PAK1_HUMAN -
45 Fugue 73.4730% -5 - C1 -4DN5 3.0 M3K14_HUMAN
5 PsiBlast_PDB 73.3635% -30 - C1 -4ZLO 5.7 PAK1_HUMAN
18 PsiBlast_PDB 69.7834% - - C1 -3Q52 - PAK1_HUMAN -