@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_19_0590: (2018-03-09 )
MLPSSAPPWGPGPHDPAPYSTIAAHNCTAECVDGPTSGSATHNRSTSPRGQPAGGDTASPTPASVEVLGRKTQHRRCSTSPPLKPLMKEAVLARALEKPRCTLASAAMESTGDPPHPSKDSDAETSACIRATCTGSRTRVDHAPPLSLSATVSSVQQHLGMIPQVASSNSASYQASASAPSTPSNRKEASKMQRRSSSAFMSRLPSDTRLRTSLLAAFGVQHAETHGRCDAPSHAPLPVRGSLSMTNSTDVTPVASDTHFRRSVNEGCSTVESHCTATAAASCVVVRAPSGAFRALPHPSIWLNTSLAGIGGVPSFNSSTPSTNASVLKDRHSSGTGTCEVPSESSLLPPFRTSSLDRDGVGAEDCGSEASGTASTSATVEVLHSGDANPVTGDRCSRLPSGRSINTSVSGEVGGFAPDASGTSTAHHTCAESNSSAGGGAELQGAGCSFGWRMFSSLTSQRGGGGGGAPAPSLGIFQSGLYLSMDEGDVSPAPALEVPMTPQSFSTMLLARESSEGAQHPVRAGSATSATTTNGARSSSLAVQEGNDTMLRQSSQQVPIVSQLAEDAWSGGGVAANGIEDWCVDGGSRDSREARTTSTTHTSGVGSHPCLVPGSGSGRCVIGGCCATPLSSFQLLGGSSKQEMPTSALDTDEIPSTPTDISALPYPPPPPLSARRRRQRRACHHCDGGNAVSSNSRVDLETGVIETDTLERARAVSKDGSRAYEIVNGKYVMYDYELGRGSYATVRLCYNLADGHFYAVKVLDRVRLKRRQLGSEAGLCKIDQEIAMMKQVQHKNIIALHEVIRDPSMRYVYLVLELAESREVLSMRDNGDVLPRGDDDGAATAYPEAAAREMVKGLLQALMYIHYLGVAHRDIKPSNVLRTADGTVKLCDFGVSVLVGDAPMQLSREGSVAFLAPELLLSSEVEVSRFLTPDDSSLGSTRNKSATHMLADSALATATRNARTTVTSTTTATSATELASTGGPASPKEEGAKWTQRLMSSFAGAALQPNARAAASRAPGREIASPGGGAPSAIPPWPSSASLPKRGGGGGAARRASFRTLSLSPCGAAARECAAAIATAAVSPCAGGAAAVTPPTGAYSPSTPAAQPFSDLSKSAGNAPVDLLKADVFALGVTVYTLLLGHLPWRASSAVSQRAAILAEPDPFLRLYKAAYGDAYVGPPQVREACMPRCDVLGSDAIPASSHASTSASGKDGRGASYGTANAELSDGQWAIAAEKDDVVTPAPVTALPCKWRHLSNTGTTPDECTSEQEKCTPTAAKLTAAPQPHRNAPTRSDRNSAQPVGERSTAAAALPRPATQLLAKKATTSESRAPKDLAESPSDDHNPRAPFEAPPPPMPPQQERHLHRFQWRPFMDVVLGSAPIKTATAAGTAITQQAQVTVRHRRGGGGELVDGDLRQTNATTTCIRSRAPAVKMLLSRAATQPRFGSVVQVPHSLAICGDERATWEAQGAAMSGPAVAPPLRPRGPTTTPDQLYPYRGILDVDDDDWMKADESDVVQGMKESAINAEQWVPGSSSDLLRTVPSSAVTGTRSNDSEADSASDCDSSTTTVPCSAAKSTASSLPSDDDEDLESCESIYERLFEMEQPCRAYTVVEHMPLPTMSGTSREISGEAVDFVRSCLCLDPAERRTVFELFRHPWIRGGEGAMLAEAGTSAGSP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]



EBD_A_2(3LM0)
ST17B_HUMAN
[Raw transfer]



QUE_A_2(3LM5)
ST17B_HUMAN
[Raw transfer]



GOL_A_5(5FG8)
KCC2A_DROME
[Raw transfer]



1PE_A_2(4B4L)
DAPK1_HUMAN
[Raw transfer]



EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]
57 Fugue 62.7914% - - C1 -3QA8 - ? -
45 HHSearch 62.5225% -56 - C1 -4B4L 2.3 DAPK1_HUMAN
48 Fugue 62.4919% -41 - C1 -4DN5 - M3K14_HUMAN -
38 HHSearch 62.2825% -58 - C1 -2X0G - DAPK1_HUMAN -
34 HHSearch 61.9921% -85 - C1 -3C0G - CSKP_HUMAN -
35 HHSearch 60.5625% -62 - C1 -4XBR - INKA1_HUMAN (first) -
30 HHSearch 60.4421% -83 * C1 *3C0I - CSKP_HUMAN -
41 HHSearch 59.6826% -52 - C1 -2BDW - KCC2D_CAEEL -
24 HHSearch 57.3324% -31 - C1 -2Y7J - PHKG2_HUMAN -
46 HHSearch 57.0122%-111 - C1 -4JXF - PLK4_HUMAN -
31 HHSearch 56.4025% -71 - C1 -5J5T - M4K3_HUMAN -
44 HHSearch 55.2425% -26 - C1 -4NIF - KS6A1_HUMAN -
25 HHSearch 53.5924% -28 - C1 -2Y7J - PHKG2_HUMAN -
19 PsiBlast_PDB 51.9931% -90 - C1 -3LM5 5.0 ST17B_HUMAN
18 PsiBlast_PDB 51.9231% -88 - C1 -3LM0 6.8 ST17B_HUMAN
22 HHSearch 51.6722% -74 - C1 -2X4F - MYLK4_HUMAN -
49 Fugue 51.1717% -25 - C1 -1KOB - ? -
21 HHSearch 50.7720% -48 - C1 -1TKI - TITIN_HUMAN -
9 PsiBlast_PDB 49.8829% -97 - C1 -3KK8 - KCC2D_CAEEL -
3 PsiBlast_PDB 47.7334% -27 - C1 -5UYJ - KKCC2_HUMAN -