@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_20_0310: (2018-03-09 )
MRRLLPIKKLLGSTAGFRLASTKSSGTERLERLVEEVNGIKSKLKVLEESKAANGLVDLYASRKMKRLDIKRILSIFNDRAYHAPIFCHKALPIILAHFITGLDKLPSGLNAMPSILAVRATLLRSFQKLINCKIPATDDQVQHFRRVLEDIDEEHAERDLLQTMAFGILELKEYVSSHRRALVDLKKTSERWASIPMTEENVLTYAEIQDIQAPLDSVNRCMITYNFISRMFLNHDPDMTMGSNPRRIGMVDLEMNLEHVVRNAVDEAKQICTDHYGDCPDTEFEFTSDSKAFRFPYMSTTIRYIILELMKNAFRATVDSHMKRNDVGMVTCADMPPVRVLINLQEGTEHACICISDEGMGMTDEALAMAMAYSYTSVSKPALQLGDSGEGCASTAPSPLAGYGYGLPMSRVYAQSLGGDLFLQTMEGYGTRAYYYIKIADAQPLCDEETK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_10(3CRL)
PDK2_RAT
[Raw transfer]



ANP_B_6(2E0A)
PDK4_HUMAN
[Raw transfer]



ATP_A_7(1Y8P)
PDK3_HUMAN
[Raw transfer]



ATP_A_2(2BU2)
PDK2_HUMAN
[Raw transfer]



ADP_B_6(3D2R)
PDK4_HUMAN
[Raw transfer]



7FE_A_2(5M4P)
PDK2_HUMAN
[Raw transfer]



7F9_A_3(5M4K)
PDK2_HUMAN
[Raw transfer]



ADP_A_2(2BU8)
PDK2_HUMAN
[Raw transfer]



SZ6_A_4(4V25)
PDK2_HUMAN
[Raw transfer]



7FW_A_2(5M4M)
PDK2_HUMAN
[Raw transfer]



7TJ_A_5(4V26)
PDK2_HUMAN
[Raw transfer]



PV1_A_2(4MP2)
PDK2_HUMAN
[Raw transfer]



7FV_A_2(5M4N)
PDK2_HUMAN
[Raw transfer]



RDC_A_5(2Q8I)
PDK3_HUMAN
[Raw transfer]



P35_A_3(5J71)
PDK2_HUMAN
[Raw transfer]
23 HHSearch 81.7830% -24 - C1 -3CRL 5.3 PDK2_RAT
43 Fugue 81.4128% -24 - C1 -1JM6 - PDK2_RAT -
1 PsiBlast_PDB 81.3128% -30 - C1 -2Q8G - PDK1_HUMAN -
44 Fugue 80.9627%-119 - C1 -1GKZ - BCKD_RAT -
2 PsiBlast_PDB 80.3629% -21 - C1 -1Y8P 7.4 PDK3_HUMAN
3 PsiBlast_PDB 79.0129% -27 - C1 -2Q8I 5.6 PDK3_HUMAN
4 PsiBlast_PDB 78.9229% -31 - C1 -2PNR - PDK3_HUMAN -
24 HHSearch 78.5331% -20 - C1 -5J71 - PDK2_HUMAN -
25 HHSearch 74.9927% -37 - C1 -2E0A 8.0 PDK4_HUMAN
19 PsiBlast_PDB 74.1829% -26 - C1 -1JM6 - PDK2_RAT -
26 HHSearch 73.0027% -26 - C1 -3D2R 7.7 PDK4_HUMAN
18 PsiBlast_PDB 72.8929% -40 - C1 -2BU8 4.4 PDK2_HUMAN
6 PsiBlast_PDB 72.1529% -28 - C1 -4MP2 4.0 PDK2_HUMAN
12 PsiBlast_PDB 70.0829% -7 - C1 -5M4P 7.7 PDK2_HUMAN
10 PsiBlast_PDB 70.0729% -6 - C1 -5M4M 5.5 PDK2_HUMAN
5 PsiBlast_PDB 68.9329% -6 - C1 -4V26 7.5 PDK2_HUMAN
17 PsiBlast_PDB 68.3329% -3 - C1 -2BU7 - PDK2_HUMAN -
9 PsiBlast_PDB 68.1429% -10 - C1 -5M4K 3.8 PDK2_HUMAN
8 PsiBlast_PDB 68.0429% -7 - C1 -4V25 6.4 PDK2_HUMAN
20 PsiBlast_PDB 67.2029% -4 - C1 -3CRK - PDK2_RAT -