@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_21_0190: (2018-03-09 )
MRLCAPLGTHTAAFRAGGTPAQEHASTGMQRGMEKTMSRDVDVESAFTALSPSAGEKEMVHGANAASGLYCFKDTLRIELPVISSEHCATFSSLADGTGGGSPETAIYRPSETAFSLEIEECTPLSIEEDNARQSAVALLQAGILPKSAGGSSRRGTSRRLPSFIPTFSSLEPIEAMRKKSPVSLFTSIRRKNICSLSMEADLTRGGEPDGVIPCSGEFNRSSGSFELHPDLTTVIARGASSAAPSPERQQRCGSTFTSPAPSQTASSMSLADESEESGDSSDQGIEMDLVLRDASKIRGLRLTWLLYMLIVMVIVLFVLVLVQITYETSRMLTRSATEAVQAQAASLLNSVDMQQYALEKLFEVMREAKITGFSPDSITHIIVRDIICSSLYRAPIAFAMYDKAGELQWKTSCKWNDTVDMLAELPKTVLPGIAFMRIVDYGKLALAYRTFYASSGGVETYVVMTEKETLGRTLMNNDMADYSTATLQSVMTAFFLPRWNSTQLTMLFHTLTKEARSYTNTPTSPSAAALTAAFESLCHTDSPYVWHIVLMPVNASGIVKQSIRAADWPETKTRTIPTPRFEYKRTWGQLSKANLCGVKCMSAEGEKCTLDNPTNVWFLVDYTMAHLESIHTTVAIVGALSVMAVVIFSVIMFLVYLSITVPVNYLRYQLMRAVGSNEMATPWQRKIVRWTYRLWLGDLTSIARSIYILSLCFRLNKKYVPDHVLRNHAKQLYMRRRKFNFLEEADLKEDTMLEHDTDSDNEAESPLVGVNTVLPPSDKRFLWHFSVTHDKDEADHAASENGVGARISDGATFAEVSPVYAPRPQLPTTSYEVVVPCGRAAPAPRGVGLPRDVPLNVKAYGELEDTVAMQEASTMAAATAMTTQSSNDIMSIRREYETTVLCIRIPSVELAYLINYSGAAHQHRRLMRVLLHRIRRHKGALFHCSGDCLGAVWNAFEGCPNHAECAAVCAQEIANAFAPYRSDGLYVGMVLHQGTLVCGTVEYSKTAFVTAFGDGPREALAVAELAAAVKTLNVLVTEPVKQALSGLYDCNIVDVIQLPNSAHPLLLFELSGSRTPERSLNDTHLQAPTQAEFSIDYARAFAQFRNHEFSKALQSIQKLRTHISSRNVHLLRRLERLCLFYSAQPAALPRPYHRAFPVWVNYEAIAQAGLRNDPHLTTSQTESLTAHNMNRGLVYQGVPVLRNDMDCIRDFKQELQANMRRLVSPQRTTRQSGSPTLDNAATPTQDSLHASLPMRSTPLPMPMSAGMLLEVSGDLSESLSAAMPAKPRYVDPQENAAEMSLPPLRPAPVVTVAPPCFIAGPPLVAASAATPIACEEAKGRNGPEWTSPEVSSPHGMPFPSRHPAVTHSATNLPPVAVAGTPDLVTASAALLQSAATHTDSINSSAQADGASCSIIQSAGLSFQGTGGMRGFCVSNETLPATIKAKNGTTYLRSTRILGKGSFGCVYLGMDAHSGRLVAIKFLPLPSDESGMEVIEAEVLILQRVNDTHVVQLLSYAFEGDTIVIFMECMLAGSLQNMIAAFRTIPSSTARVFMRDVLRGLSKLHSMGVIHRDMKPQNVLLSFAGNCKISDFGASAWLQELARKESKGEVCGTPVYLAPEAARGSPEKESDIWSCGIMFLHMITGRLPYSPEQLALGAAALVYQIGSGIAQPNIPDDLDVLDAEFVRACLDKDPSKRTSAAGLLQLALFTV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



4T6_A_3(4ZY6)
PAK1_HUMAN
[Raw transfer]



4T3_A_3(4ZY4)
PAK1_HUMAN
[Raw transfer]



STU_B_2(1BYG)
CSK_HUMAN
[Raw transfer]



76A_A_2(2E9N)
CHK1_HUMAN
[Raw transfer]



GOL_A_4(4ZLO)
PAK1_HUMAN
[Raw transfer]



YEX_A_9(2YEX)
CHK1_HUMAN
[Raw transfer]



DMS_A_3(5DFP)
PAK1_HUMAN
[Raw transfer]
14 PsiBlast_PDB 74.4134%-100 - C1 -3FXZ - ? -
13 PsiBlast_PDB 73.7834% -95 - C1 -4EQC - PAK1_HUMAN -
17 PsiBlast_PDB 73.4634% -97 - C1 -5DFP 3.3 PAK1_HUMAN
9 PsiBlast_PDB 72.9734% -99 - C1 -5DEW - PAK1_HUMAN -
8 PsiBlast_PDB 72.9634%-102 - C1 -5DEY - PAK1_HUMAN -
16 PsiBlast_PDB 72.9534%-100 - C1 -4DAW - PAK1_HUMAN -
15 PsiBlast_PDB 72.8434% -96 - C1 -3FY0 - PAK1_HUMAN -
1 PsiBlast_PDB 72.6035% -94 - C1 -1YHV - ? -
11 PsiBlast_PDB 72.0434%-106 - C1 -4ZJJ - PAK1_HUMAN -
7 PsiBlast_PDB 71.9834% -94 - C1 -1YHW - PAK1_HUMAN -
2 PsiBlast_PDB 71.4035% -98 - C1 -5KBQ - PAK1_HUMAN -
4 PsiBlast_PDB 71.2834% -93 - C1 -4O0R - PAK1_HUMAN -
12 PsiBlast_PDB 71.2034%-108 - C1 -4ZLO 2.9 PAK1_HUMAN
10 PsiBlast_PDB 71.0834%-112 - C1 -4ZJI - PAK1_HUMAN -
52 Fugue 70.7320% -33 - C1 -3C4Z - RK_BOVIN -
5 PsiBlast_PDB 68.7434% -85 - C1 -4O0T - PAK1_HUMAN -
19 PsiBlast_PDB 66.8434% -93 - C1 -4ZY6 6.1 PAK1_HUMAN
18 PsiBlast_PDB 66.2534% -90 - C1 -4ZY4 5.2 PAK1_HUMAN
53 Fugue 62.4825% -65 - C1 -4DN5 5.5 M3K14_HUMAN
36 HHSearch 62.3126% -80 - C1 -5JZN - DCLK1_HUMAN -