@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_21_0330: (2018-03-09 )
MATVDTVRGRYSSYKLLNEVGRGGSALVYRAQDVATRKDVAVKQLFGNRPQDMEDWLREVDALHTLNNHHCPHVVKYLDHMQQHDRLFLVEEFTEHGSLLRRLKENSKLPEDIACRYIYQVLTALYHMAPWGVVHGDLKASNILLFDGDVVKLTDFALRSHGEDDHEDGERRTTAASTPSAEALPLMRGSRAGRGAGEECSGSALSVFRGSAYWAAPEVLAGASKATAASDIWSVGCLAVELLTGAPPYFERPIHNAIHHILKSYYEVLCESEASRVGAAGTSRASTNPATPSAAMGSGDDDGPRGPRKKKNGAKDGCGAAPQKTDVASARRATATTSTHNPPKEPVDAVKTAASSGAVCASDRNEVATPLCEAALLPPLPEDVHLSDECLSFLRMCFRPRAVDRPSAGELLHDPWFLDCTVPQLLRAAREGRPMNGTTGDESVSAGTSSGSRFGVIEQWVKRNLTCDNESRCEAWLNSDALPLLVPVLTPRIMTPKYIGNVMWCFSQFAESRSALATLFVDRLGSTELWGVEELTSACDADHLATLFRRCCATQDAQVPVYTPADPRALRFVLGLEKEKVLACVRALHSRLVLEPTAAAMAADASSLATATDDTAVDLNDCPASSRDPAAPAHAAPDRAPASLQEQHEQQQRARERLLSDGGAAVLCQCVEAQCKAAFLSNTAPMMEWSTMNLLFDVLCTIEPLAGGQALLWGLGADLSGGHTSPSSTVGTGGGGAAILKSLTVVVNPCGGRGGGELNSTWEKSSPGTGPPLLVSPISVSPQESIPTTAAAAGGGGGPLSSLGSTMGFGCHTVSGLPPESVQWATSMTWLLAVQEAARHLCETAVRLLTRYIPVARRCRAEYLEKAGVSLTATLVLVASSEVVSTDVRCAAVEALPQLQASSLRATRYLRDPVRCIALLALTLKRSYGVPALTSCLLTAITAMTSEKQMLAACTGCPWVWESLVSLLREVEAADKAAAAGGKRSSSALHSAASTDGGAAEGAVAPPALVAAAASPTSVKSPSASSSSGAVAAGGAAVFADIVVLLSRWFAEVTPTALLSSAVTAAAAASEAIPALGHPAASLPLPVLLQTLRCQLIALSQNGRVCHGDLMPDVAKALRHLAPLEAAAVAASTSTATVA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

X4Z_A_3(4O0R)

[Raw transfer]



4T3_A_3(4ZY4)
PAK1_HUMAN
[Raw transfer]



ATP_A_5(2PHK)
PHKG1_RABIT
[Raw transfer]



4T6_A_3(4ZY6)
PAK1_HUMAN
[Raw transfer]



IPV_A_3(5KBQ)
PAK1_HUMAN
[Raw transfer]



EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]
51 Fugue 86.1916% - - C1 -3QA8 - ? -
38 HHSearch 65.4126% -16 - C1 -4RED - AAPK1_HUMAN -
39 HHSearch 63.9926% -15 - C1 -4RED - AAPK1_HUMAN -
30 HHSearch 61.9030%-100 - C1 -4XBR - INKA1_HUMAN -
7 PsiBlast_PDB 60.4031% -50 - C1 -3Q53 - -
49 Fugue 60.2321% 37 - C1 -1KOB - ? -
45 Fugue 59.1020% -1 - C1 -1TKI - TITIN_HUMAN -
33 HHSearch 58.1628% -81 - C1 -5K00 - MELK_HUMAN -
52 Fugue 57.2929% 3 - C1 -1VR2 - VGFR2_HUMAN -
8 PsiBlast_PDB 57.0431% -48 - C1 -3FXZ - ? -
10 PsiBlast_PDB 57.0331% -46 - C1 -4DAW - -
23 HHSearch 56.9729%-105 - C1 -5J5T - M4K3_HUMAN -
18 PsiBlast_PDB 56.7931% -52 - C1 -4O0R 6.5
15 PsiBlast_PDB 55.8831% -49 - C1 -1YHV - ? -
20 PsiBlast_PDB 55.7731% -49 - C1 -5KBQ 6.7 PAK1_HUMAN
5 PsiBlast_PDB 55.4331% -45 - C1 -1YHW - PAK1_HUMAN -
9 PsiBlast_PDB 55.1831% -50 - C1 -3FY0 - -
12 PsiBlast_PDB 55.0131% -50 - C1 -4EQC - -
16 PsiBlast_PDB 54.7931% -53 - C1 -5DEY - PAK1_HUMAN -
24 HHSearch 54.5030% 12 - C1 -2PHK 5.0 PHKG1_RABIT