@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_21_1870: (2018-03-09 )
MEKYTQLKVLGKGSFGSAWLIQRNADRAQFVAKEVRLGGLKPAERESAQKEIDMLRTLNHPNITRYVDHFEHKGSLFIVMEYANGGDLYMRIKQQQGQLFSEKGILQCFSQICLALSYMHERRILHRDLKTQNVFLTKDGVVKVGDFGISTVLRNTYELKHTICGTPYYFSPELCLNKPYNNKSDVWALGCILYEMTTLNHAFDGSNMKALVQKILKGVYPPIHPMYSSNLSRLISSMLQIDPHKRPNVSQVLDLSFIREALAGLREEVQVARADRRSVVSVEERAHMQEAAARRKEEYRRKELEAAATLAKAQQQQQAILMQQQLEGEERRRNLVEQQRRLQRQQELALQERKRALDERVREQRKLQGQKSKVDAKAHHHREKQWDENMKEQVIEEQRRREAEEHHPRSDCQSPPQLQQERLQQQQEQSAAEAYREMRRQAAANKQRCYRESVFPGGAPCSQQRQQDESSAVPPGQPPPPRTPPSSSHYCSRKMTPEELEDARSQAFWQMRREAMDNRKKMLGHDVTDTGEPRAPTSAEAAPGASPASSNGKSASVASVPAPPQMSTLPPPSSAAAEETKPTKKSMSRKDKFTPESTGAQLPAPSPAPAVLLPPGAAAAAVPQEVDNGMTPDGEEGLHNFLNGEAAAASPTEAEDRRRDDDYNALDTVIGETLKADRKKNFKDDFDDAAFGEATDSSRLVLDGKTFHLPNVSATDPLMHRIESLRIFLEKEMGDDDLIKCYRAMNNISASDDEVMHQLQSALPPSKQRFIPLVAHLVVCEDAFNRQGASSSASASAIGL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_3(4GV1)
AKT1_HUMAN
[Raw transfer]



5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]



XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]



30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]



T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]



OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]



VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]



EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]



WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]



BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]



4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]



GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



GOL_A_14(2XNO)
NEK2_HUMAN
[Raw transfer]



430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]



CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]



WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]



ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]



CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]



ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]



0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]



EDO_A_3(4JXF)
PLK4_HUMAN
[Raw transfer]
24 HHSearch 94.8852%-133 - C1 -4B9D 5.9 NEK1_HUMAN
25 HHSearch 94.4752%-131 - C1 -4APC - NEK1_HUMAN -
1 PsiBlast_PDB 92.6352%-136 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 91.2152%-137 - C1 -4B9D 5.0 NEK1_HUMAN
6 PsiBlast_PDB 75.2639% -38 - C1 -2W5A 5.5 NEK2_HUMAN
17 PsiBlast_PDB 72.7039% -40 - C1 -2XNM 7.9 NEK2_HUMAN
14 PsiBlast_PDB 71.5839% -45 - C1 -2XKD 6.7 NEK2_HUMAN
19 PsiBlast_PDB 71.1639% -29 - C1 -2XNO 6.4 NEK2_HUMAN
20 PsiBlast_PDB 70.8939% -38 - C1 -2XNP 8.8 NEK2_HUMAN
18 PsiBlast_PDB 70.5739% -31 - C1 -2XNN 6.3 NEK2_HUMAN
15 PsiBlast_PDB 69.8939% -32 - C1 -2XKF 6.3 NEK2_HUMAN
16 PsiBlast_PDB 69.4139% -35 - C1 -2XKE 6.1 NEK2_HUMAN
9 PsiBlast_PDB 68.8639% -34 - C1 -2XK4 7.1 NEK2_HUMAN
11 PsiBlast_PDB 68.5339% -28 - C1 -2XK7 6.3 NEK2_HUMAN
10 PsiBlast_PDB 68.3139% -24 - C1 -2XK6 6.4 NEK2_HUMAN
8 PsiBlast_PDB 67.9839% -25 - C1 -2XK3 5.9 NEK2_HUMAN
7 PsiBlast_PDB 67.5739% -27 - C1 -2WQO 7.4 NEK2_HUMAN
13 PsiBlast_PDB 67.2639% -30 - C1 -2XKC 7.0 NEK2_HUMAN
12 PsiBlast_PDB 66.8839% -30 - C1 -2XK8 6.9 NEK2_HUMAN
40 HHSearch 65.5826% -91 - C1 -4BGQ - CDKL5_HUMAN -
34 HHSearch 57.7230% -17 - C1 -4GV1 5.5 AKT1_HUMAN