@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_25_0690: (2018-03-10 )
MDLSPLQLHDEAAPLRRSTGVAATFGGLSPPLPSERQSIDQPRRHKSDKHHHISRDSSPNPTIGSCSGDAPTSQASLPLLAGMMASRKELFTELAIPSTQSMNGQQQAQGMSSSPADAAQPSTSQDGVGTASRALSPRALSTLGSLGPSGPVAGLLATSPPGKDLSNAALRGGFLSESISLVESSVSSISRSALRLHRGRARDRLPSDREDSSGMGGGRNDDVPSQVQLPPITRSLTSASASLRGRQFPTALQELEGSSAGIGLPTLSCSSSLNSMRHEDEGPCLAPALKIVLEASAAVGQPPRPLHPAALPRSSDERCDVDSIKPSSSFSLVQSARRAIAMGMGSDDDAKTRGHQPTPIEVSDRGDGTTMLATAPVSLTVEAAPLTLTGGLTGQSSSRNSTGMRQTTCANTPAFPFEKNAAVTPIANSGFSRFDTAVLESGDYAPEATRPPTGERSSGPKHGSLQSLDHDNYTTAARGATGQQRPSDSIENDDAAHQKRAKRRLRKTRKKGKAKRQKNGEAVAEGENGVAVDSLKAAAVAHRSDSALARKRERKRQLKHEKMKEMSSEERRQYKAEHQRRRAAKKAMRSSAAAASPHLEHDNHGDWSGSRPYHSSDPSASFSPAPVPTAGAVKQHPPLSSSPELSQPLAPVTAAAADPDAKMTSSHARQPSTKSEVEQSVPSLVDRSSLEDLAATLSPQVLASTCSASTNALADGSSSLLKAFQGRRCTSASGGGAPVVPSTAYPSKLMSSTPMPFRRRLFTDIAGRPQHQGGTNSFLHVSSSTPANVSGLEGQLQVHNADAEGFGMEHDATLEASGGSADNYDDNESRGPPRRQPMDESGSVVDVVPERAPMPDGGALSPSPHLPAAAAGSGTAAILELKQQQEVQQRYRLPSLAAGTSLAAMLVSVANANGDVASADASEASLMTASAPGRGADHCQGSSLPLRPDAKTSQSVEPGLNQSPTGDALTGAVTKGTAVMPVTSMSYCSAYSRSHTRDWEPAAVEPAVKGAGGAEGCGAGQKALTPAAAVSAAMAAARKARRSPSSSCSSLRSRSSDDESADGSSGYSYSSYSSSGSLVPEVLQLVGGCTVPPPVAAFSDLKYRYSCVPQLHSYAEPAIIHEWNLAEGCWGSVETSVVLNPQPFSKGNMRASYYMIDMRRLNCLLVAKRYLRSTVRDDQYFDDVSMHSIAGHWARAFNMMHPPKEVRFVPAAVLVLPKRNPPLILAMEPQLTGKFVKYNNNCGYVRRKARWTPQAFSHFTYHASNHELMVVDIQGVDDYYTDPQILSSDGEGYGRGNLGEEGIRRFLESHRCNEVCRAVGLPPLQRNAKGAVITPLASPGSGRSSAGPGTPAAKDRLNTAMPCASGLKEERLPPKAFVLARRASSGNTPGQEHNGVQLGSRQPSETNLMLSPAPPPRQTLHTGSRPSSPSPLAAAPSALTPGALPHRVGPVQNCGVKYVRYPRQALIRPQSQYFVSTVAGGLMSVPPQGSSVPNGYGSGSSFSALQSYPPASEQSGGAPSGMAGVGHASTSPPPQGSVMVAVPLLRPPAGGRPGYAGAQSSVSPEGFHLLTAPRSGENVGSLHQTPHVRPSGTTNLGGGVPNFYPHPPVTGAVGSPTGRCASHQSSFAAVAPTIQSTEEVAMAHRPRSRRQSFSRRPVFSAVEEMPKRSESRYHGHPHLH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_8(3LMI)
MHCKA_DICDI
[Raw transfer]



ANP_A_3(5E9E)
MHCKA_DICDI
[Raw transfer]



ADP_A_6(3PDT)

[Raw transfer]



ATP_A_5(4ZS4)
MHCKA_DICDI
[Raw transfer]



ANP_A_5(1IA9)
TRPM7_MOUSE
[Raw transfer]



AMP_A_6(5DYJ)
MHCKA_DICDI
[Raw transfer]



ACP_A_4(3LLA)
MHCKA_DICDI
[Raw transfer]



AMP_A_8(3LKM)

[Raw transfer]



ADP_A_6(1IAH)
TRPM7_MOUSE
[Raw transfer]



ADN_A_4(4ZME)
MHCKA_DICDI
[Raw transfer]



PEG_A_4(4KUJ)
?
[Raw transfer]
22 HHSearch 73.1740% 12 - C1 -3PDT - -
21 HHSearch 72.3437% 3 - C1 -3LKM - -
34 Fugue 72.1139% 12 - C1 -3LKM - -
35 Fugue 61.6226% 0 - C1 -1IA9 - TRPM7_MOUSE -
24 HHSearch 59.6229% 24 - C1 -1IA9 - TRPM7_MOUSE -
25 HHSearch 59.3828% -35 * C1 *4KUJ - ? -
23 HHSearch 59.3629% 31 - C1 -1IAH - -
4 PsiBlast_PDB 57.5243% -14 - C1 -5E9E 3.8 MHCKA_DICDI
1 PsiBlast_PDB 56.2848% -14 - C1 -3PDT 3.8
6 PsiBlast_PDB 56.1942% -9 - C1 -4ZME 3.6 MHCKA_DICDI
8 PsiBlast_PDB 56.1648% -25 - C1 -5DYJ 3.6 MHCKA_DICDI
2 PsiBlast_PDB 55.5143% -20 - C1 -3LKM 3.7
3 PsiBlast_PDB 55.4843% -17 - C1 -3LLA 3.7 MHCKA_DICDI
10 PsiBlast_PDB 55.4742% -19 - C1 -4ZS4 3.6 MHCKA_DICDI
7 PsiBlast_PDB 54.9142% -12 - C1 -4ZMF - MHCKA_DICDI -
9 PsiBlast_PDB 54.3542% -11 - C1 -3LMI 3.9 MHCKA_DICDI
5 PsiBlast_PDB 53.3142% -15 - C1 -5E4H - MHCKA_DICDI -
14 PsiBlast_PDB 53.0428% -22 - C1 -4KUJ 2.2 ?
15 PsiBlast_PDB 52.3628% -21 - C1 -4NL0 - ? -
32 HHSearch 46.9915%-220 - C- -2D1L - MTSS1_MOUSE -