@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_25_2070: (2018-03-10 )
MEAVVKLNRKLGVGGRGVVYEGFDHARGHFVAIKELAYMEPSVADEDDTELAAILSELAYMREAQHTNLVEYYGARRCAIGIQIIMEYVSGGSLDYVLTRCGPLRENVARAYTRDVLEALHYLHKTMHVCHRDVKPANILITPDGRCKLADFGVAKQVDATTPTRPAHAERGGKGMGKEEEGNSPRHRNGGRQGYLQTAVGTPWYMAPEVINGGVEDDDDGDEDLELGNACAVTIDGDANSGSFSGSFSEDWTSSGLAHTVPDASASPPPLYSSSSYYNPLKSIVKKGRLGARSVGYTTSADIWSVGVTVYEMVTGTKPFGADLTNPSAVLFRIANCAASPPQLPADVHVSAELHSFLDLCFVYDKDLRATAAELLGHPWLGPVRKGGGSGGDNASADEKPRRQLFNGKRHSRSGMRVDEGEQVQRHQQLAAQRTVFDGVPLLDSIDLPAYPATTAVSSPASSAVAECGGSGEGAHPAPDTSPRRARHSVHRLSCSGTHCSGCSVTRRSPSTISPPLSSVSIAEQAEASSRYAAVRQRIGHTRATNSAHTAASAAPLAAQSNPGSLFSTRGEFVDFMSHP

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4XBR)
INKA1_HUMAN
[Raw transfer]



IPV_A_3(5KBQ)
PAK1_HUMAN
[Raw transfer]



ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]



X4Z_A_3(4O0R)

[Raw transfer]



59N_A_3(5DEW)
PAK1_HUMAN
[Raw transfer]



59U_A_2(5DFP)
PAK1_HUMAN
[Raw transfer]



2OL_A_3(4O0T)
PAK1_HUMAN
[Raw transfer]



59T_A_3(5DEY)
PAK1_HUMAN
[Raw transfer]



GOL_A_4(4ZLO)
PAK1_HUMAN
[Raw transfer]



XR1_A_2(4EQC)

[Raw transfer]



FLL_A_2(3FXZ)
?
[Raw transfer]



ANP_A_4(3Q4Z)

[Raw transfer]



DW1_A_2(3FY0)

[Raw transfer]



4PV_A_3(4ZLO)
PAK1_HUMAN
[Raw transfer]
39 HHSearch 78.5338%-114 - C1 -4XBR 5.3 INKA1_HUMAN (first)
44 HHSearch 76.1430%-110 - C1 -4WOT - ROCK2_HUMAN -
21 HHSearch 72.2134%-112 - C1 -5J5T - M4K3_HUMAN -
34 HHSearch 63.9027% -54 - C1 -4B4L - DAPK1_HUMAN -
45 HHSearch 62.8523%-107 - C1 -2E9N - CHK1_HUMAN -
26 HHSearch 60.9225% -12 * C1 *2Y7J - PHKG2_HUMAN -
28 HHSearch 60.8325% -11 - C1 -2Y7J - PHKG2_HUMAN -
30 HHSearch 60.0827% -52 - C1 -2X0G - DAPK1_HUMAN -
35 HHSearch 59.6328% -70 - C1 -4LQS - CBK1_YEAST -
47 Fugue 59.1422% 10 - C1 -1TKI - TITIN_HUMAN -
31 HHSearch 59.0927% -56 - C1 -3C0I - CSKP_HUMAN -
46 Fugue 58.8027% -7 - C1 -4DN5 5.3 M3K14_HUMAN
43 HHSearch 58.3326% -66 - C1 -2BDW - KCC2D_CAEEL -
49 Fugue 57.8519% 21 - C1 -1KOB - ? -
36 HHSearch 56.7431% -74 - C1 -5IU2 - M3K8_HUMAN -
29 HHSearch 56.5730% -41 - C1 -2X4F - MYLK4_HUMAN -
33 HHSearch 54.6427% -56 - C1 -3C0G - CSKP_HUMAN -
22 HHSearch 53.5526% -44 - C1 -1TKI - TITIN_HUMAN -
23 HHSearch 51.6927% -25 - C1 -5O2C - WNK3_HUMAN -
40 HHSearch 50.8129% -42 - C1 -2QR8 - -
9 PsiBlast_PDB 44.3633%-121 - C1 -4ZLO 6.6 PAK1_HUMAN