@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_26_0950: (2018-03-10 )
MGPDCTAGGNGGGAHRYPPHRDVRGDEEASPRCPSPHRMRLQKQQCFQSSPENQQQQHPRALSSSNPGSPLMYTVCPATPDRSMNPYDRASPLYRSHASPHSRLGDSASPSSAMTEAGMYESNSDLSAVCPTWFNRCAASSPSLSSVMASRHLPPLQAHSPDPQSRCPQPFNSIAAAVSYSSPLGVASNESPHMKTALTSFGEASWGGLTSPNSNRGGMMASAPQQQSLGNCRSNVGHVMLPEEVSHPSKLAQSGMLNSSPSHSGGAGPARVSGASPYQCALDGLASQQQEKQQQSTLERYAPGNVTTPVGASSSAAAGGASPGSVPTGDADADKIVPRQHGDNNSLALNSSLEERLPTTAASVPHRHTSPSSVSWPRDAFASSPFSRDAPPSSHLHPRAAISPARESTPVMPLKTSPKTTSTPLRVDDSAPGGVEADCFSEARGSRASPPRPHAFSQHQSPEKGFIDSQSTGTPHPQPQPIHPLAPTSSSPQALKSPAMFGVIDLSYSRTDASGSNATPPMPTGATSVGASAVVKTRTQVRTPSRAPAVISVRVPVPSLPSNNSTPATSVNHADPTAAAASLSSTSAAATAVAPLNGGSSCSELTAHSGTTILRMVHSAGQRDSSYSTLHTTLSHSRDATTATATTTATTTPGYSPRADSQTPVHTATIASQHGTLFTPLSPLLAESDDDAVEAEQQQQQRKAVQSQQHMKSVASTALMAARVRKTAVSSPTVSVDAVRKPERSSQALTLTADTVLPVAVQEDEARCSSSAATTATRSSSNSRAQLSSSASLSRSINATTLTEPKGGTAGVAASGTGRLERVRTVVRAGSVSARNVASRERGPREKFAATFAASSSFSSKVAAAASSASASSMDMGAVAGARGAHVRRQTSVSTASTSSVASDMLRAPPALASYSFVSSRAQMQRYIDQWRDRFEEDKNAYKEGGYLTVTPGRIVHSRYVLIQKLGWGEFSTVWLGYDTKHATLGRGLSQAFVAVKVAKCRSNVQEATRYEVSLLRYLEARLPRHAAITNIIDCFDVRGEFGMHTCMVLPLCGPNLLSIIERMKADRSRRNAEDLRMIKEIVLSVLISLHELSELNVVHTDIKPENVLCSAVDSKLVNSMEKFCIYNQERSHMISVEDFKKSMAQQSTEQLVYLADFGLSALLEPPGSAQLWMSACSNVDASLLAPLMRCKKNFPVTRSGVVDNHRGTLIQTREYRAPEVLLGLDFTCTTDVWSVGCMTFELITGCFLMDPKRKTREPRDMDIEHLAMMMQILGPLPSEITSIRVRNNDYYDAIIQGTPVPKSGFRPPPEYLHRFVDRNGKFIYASRYHSYPRRNLEMELEPYLGFREAQLAANFILSCLHSYDPKKRPSAKKLLSHQWLYGVGAASKEKTPSR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NR9_A_4(3NR9)
CLK2_HUMAN
[Raw transfer]



RXZ_A_25(5MY8)
?
[Raw transfer]



3RA_A_3(3RAW)
CLK3_HUMAN
[Raw transfer]



ANP_B_8(1Q99)
SKY1_YEAST
[Raw transfer]



PVB_A_2(2X7G)
SRPK2_HUMAN
[Raw transfer]



3UL_A_2(4WUA)
?
[Raw transfer]



GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]



ADE_B_13(1Q8Y)
?
[Raw transfer]



EDO_A_5(5MY8)
?
[Raw transfer]



EDO_A_5(5MY8)
?
[Raw transfer]



EDO_A_17(5MY8)
?
[Raw transfer]
3 PsiBlast_PDB 90.0229% 0 - C- -3BEG - -
5 PsiBlast_PDB 74.0428% -48 - C1 -2X7G 6.8 SRPK2_HUMAN
4 PsiBlast_PDB 73.6829% -12 - C1 -5MY8 9.2 ?
21 HHSearch 73.2831% -27 - C1 -5MY8 2.2 ?
12 PsiBlast_PDB 72.5526% -41 - C1 -3NR9 6.5 CLK2_HUMAN
6 PsiBlast_PDB 71.1328% -46 - C1 -5MYV - SRPK2_HUMAN -
1 PsiBlast_PDB 70.9029% -11 - C1 -1WAK - SRPK1_HUMAN -
2 PsiBlast_PDB 70.1829% -7 - C1 -4WUA 6.7 ?
7 PsiBlast_PDB 65.7728% -51 - C1 -2EU9 - -
9 PsiBlast_PDB 65.6828% -57 - C1 -2WU6 - CLK3_HUMAN -
11 PsiBlast_PDB 64.3528% -55 - C1 -3RAW 4.7 CLK3_HUMAN
10 PsiBlast_PDB 63.1728% -51 - C1 -2WU7 - CLK3_HUMAN -
13 PsiBlast_PDB 59.7024% -24 - C1 -3LLT - ? -
35 HHSearch 58.7928%-120 - C1 -3LLT - ? -
33 HHSearch 55.3839% -18 - C1 -1Q99 5.5 SKY1_YEAST
30 HHSearch 55.1324% -44 - C1 -5BYZ 1.8 MK07_HUMAN
36 HHSearch 54.6039% -12 - C1 -1Q8Y 4.0 ?
50 Fugue 52.8621%-119 - C1 -1BYG - CSK_HUMAN -
23 HHSearch 52.3823% -47 * C1 *1J1B - GSK3B_HUMAN -
22 HHSearch 51.5730% -87 - C1 -4AZF - DYRK2_HUMAN -