@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_27_2420: (2018-03-11 )
MGRSMGLTAEAIAPSEGHFRHHYSLGDEIGKGAYAVVFRCNHRETKAVYAVKIVDKRKAGPKDIDDITHEIDVMGRIGYHPNVVQMIEYFSTERRFYIILDLLSGGMLFDRIIELKHYSESNASVLVRNVLSGLAHIHSRGVIHRDLKPENLLLRYAASPSTSPNSNLTDVCLADFGLAGYVPSTTCCGSPSYIAPEVISVGYYRTRKEPYDAKCDIWSIGVITYILLSGKMPFHGNSFKETFELIVSNRWSFNSDTWASVTPTAKDFIQACLTYDPVERPTALELLQHPWLANEQPHVHLGRSLESLRDLTKKKVKAAVQVFCWTQSLLGPLDWTPPFMRFLRHTDKFSTVLTHQSQTDPKQVHTVDFSKALDHKKPGWRIQDCCTCPSEQVCRHIQNVHEYLFVGKRSMEVYPFIDELRMMHEEAEDSLTADPRDAEARKRLDQVNYLIEAACVFSDELAKVPAGELKPNLMLDGSRNTLFRALGGSRSVTKTWHGSDKEDVAHRVVEKMRAQKLASPATGKTTKAAAMPPSSTPTPKPSSKPSSSKRITTTPNAGTPSRRS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]



ADP_A_3(5FG8)
KCC2A_DROME
[Raw transfer]



GVD_B_8(2VN9)
KCC2D_HUMAN
[Raw transfer]



K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]



AN2_A_3(5H9B)
KCC2A_DROME
[Raw transfer]



K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]



B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]



GOL_A_12(3IGO)
?
[Raw transfer]



B49_D_8(2Y7J)
PHKG2_HUMAN
[Raw transfer]



DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]



3AM_A_2(3C0I)
CSKP_HUMAN
[Raw transfer]



DRN_A_2(2V7O)
KCC2G_HUMAN
[Raw transfer]



1PE_A_2(4B4L)
DAPK1_HUMAN
[Raw transfer]



EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]



EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]
3 PsiBlast_PDB 85.4534%-120 - C1 -3NCG - ? -
27 HHSearch 85.3637% -82 - C1 -2BDW - KCC2D_CAEEL -
42 HHSearch 83.7037% -77 * C1 *2VZ6 - KCC2A_HUMAN -
6 PsiBlast_PDB 83.5934% -82 - C1 -2BDW - KCC2D_CAEEL -
1 PsiBlast_PDB 83.3934%-117 - C1 -3IGO 2.3 ?
36 HHSearch 82.1338% -76 - C1 -2VN9 5.3 KCC2D_HUMAN
13 PsiBlast_PDB 81.1736% -79 - C1 -2VZ6 - KCC2A_HUMAN -
14 PsiBlast_PDB 81.0136% -75 - C1 -2V7O 4.3 KCC2G_HUMAN
21 HHSearch 80.7438% -97 - C1 -2WEL 4.7 KCC2D_HUMAN
15 PsiBlast_PDB 80.6436% -73 - C1 -5U6Y - KCC2A_RAT -
12 PsiBlast_PDB 80.2236% -72 - C1 -2VN9 5.1 KCC2D_HUMAN
4 PsiBlast_PDB 80.0234% -74 - C1 -4Y5Q - ? -
11 PsiBlast_PDB 78.9136% -92 - C1 -2WEL 4.7 KCC2D_HUMAN
2 PsiBlast_PDB 78.6334% -79 - C1 -3MWU - ? -
9 PsiBlast_PDB 78.3930% -86 - C1 -3LIJ - ? -
16 PsiBlast_PDB 78.1736% -90 - C1 -5FG8 4.5 KCC2A_DROME
17 PsiBlast_PDB 78.1236% -85 - C1 -5H9B 5.8 KCC2A_DROME
22 HHSearch 77.4426% -38 - C1 -3Q5I - ? -
34 HHSearch 77.1239% -81 - C1 -5IG1 - ? -
35 HHSearch 76.7139% -75 - C1 -5IG1 - ? -