@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_29_2260: (2018-03-11 )
MLRMNRNQEDSIQPESNKDVMVHARAQSVTKSVQHRPSPHENDVDGAADAPPRRAAGARSRSPPLPSAQQRGCTRVESTSCTYTLREEIGRGEYGRVFLADATPHQLQPQLPLQHSQSASFLPSPTSGVVVGLGSKGRSEPRNAGGRPSRMVLKRMDNTSVEDGLQAATLREIMVLDEVSAGTSNRDRVERDAFRRGRAVFRPATAAPSNTHVQEGFPSSFVDHNRYCSGGAAEDEWDDAALSSSGPLRIGALDALSAQQRRRISRGRQHLIGIRDAILRPREQLAYVVMDYCEGGDLWHFMRDLKVSVRSSSGKFGDIMSTRVFRRWSVELILALGFLHSHNIAHRDLKPQNLMLAKRTDAILSSSFAVDSANGSELCDIEGAPAGELYTLKVGDFGLSRLEGIPYKKYVHEAVTLWYRSPDVLLGNTNYTYSADAWSLGCILVEMASGTVLFKGKDEADELRHIFTRGCRPSPSIFPRMRDYHYCERYAEVLNRYQEADTENMTSEELMQMQLERISRHLRAFLRDRHALELLGDAGVDLVARLLILDPERRLTVLEAMNHRFFTNAYAEVYGADG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_2(3GC0)
?
[Raw transfer]



2AN_A_3(3PXQ)
CDK2_HUMAN
[Raw transfer]



4WE_A_2(5BYZ)
MK07_HUMAN
[Raw transfer]



2AN_A_5(3PXQ)
CDK2_HUMAN
[Raw transfer]
43 HHSearch 93.1233%-139 - C1 -3GC0 4.3 ?
35 HHSearch 87.5430%-125 - C1 -1UA2 - CDK7_HUMAN -
42 HHSearch 78.6624%-130 - C1 -2BDW - KCC2D_CAEEL -
37 HHSearch 76.4728% -31 - C1 -5BYZ 7.6 MK07_HUMAN
41 HHSearch 71.9722%-135 - C1 -1KOB - ? -
23 HHSearch 71.3223%-137 - C1 -2X4F - MYLK4_HUMAN -
17 PsiBlast_PDB 71.2628%-131 - C1 -1GIJ - CDK2_HUMAN -
16 PsiBlast_PDB 70.7428%-130 - C1 -1GII - CDK2_HUMAN -
18 PsiBlast_PDB 69.7328%-131 - C1 -2DS1 - CDK2_HUMAN -
30 HHSearch 69.6128% -33 - C1 -2Y7J - PHKG2_HUMAN -
22 HHSearch 69.6024% 0 - C- -2WEL - KCC2D_HUMAN -
1 PsiBlast_PDB 69.4931%-124 - C1 -1V0O - CDC2H_PLAFK -
21 HHSearch 69.4722%-133 - C1 -1TKI - TITIN_HUMAN -
3 PsiBlast_PDB 68.9631%-129 - C1 -1V0P - CDC2H_PLAFK -
14 PsiBlast_PDB 67.5429%-134 - C1 -4YC3 - CDK1_HUMAN -
13 PsiBlast_PDB 67.2829%-134 - C1 -5LQF - CDK1_HUMAN -
25 HHSearch 67.0828% -30 - C1 -2Y7J - PHKG2_HUMAN -
27 HHSearch 66.6826% -48 * C1 *1J1B - GSK3B_HUMAN -
26 HHSearch 66.4625% -47 - C1 -3C0I - CSKP_HUMAN -
7 PsiBlast_PDB 66.3632%-127 - C1 -2PK9 - PHO85_YEAST -