@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_29_2780: (2018-03-11 )
MSGEAAAAEQRMRDYEVFEHLGSGATSDVYRVVNKTNNRTYVLKKMSLANMSDEEQLRAKQEIIVMDNVDHPNIVKFRESFMDPADNSVDIIMEYCEFGTLEDLIERQRYEGRPFPTDVLLEWMAELLCGLSHIHSNRILHRDLKTSNIFVTSKNHLKLGDFGVCTILSNPNAKAESMIGTPLYFAPEVCNSDPHDERSDVWSLGVVFYEMCTLRRPFEAGNLFTLIQLILESDIEPFGNGVDGSLEGLVRQMLDRDPSRRPTAQELIDVHLEVPVSHPSHPSQKPSRGRLLQQFSGPELQYTKKWPPPEGSVTVPPKSGKARATDEWIHTGSALDVFVELQRTLHRIPTAAKAKDGAAFTPSPQSAPGATLKVSSAVAKPKPEKSAKKSTGAKGTAGTTTASSSLPRTKAIEHAGAQKEDAVLGTSLLSFTMRELQLDVQRRRTSMFGEKKSLNSDDIPLVIEVQGESFSEATAAKATVSFLADIAAVIDRHTANGGQIALEALDGAACLLSEYKHLKYAR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]



CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]



XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]



6G2_A_2(5J5T)
M4K3_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



GOL_A_4(5O2C)
WNK3_HUMAN
[Raw transfer]



ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]



EDO_A_5(2W5A)
NEK2_HUMAN
[Raw transfer]
25 HHSearch 88.8736%-118 - C1 -4APC - NEK1_HUMAN -
23 HHSearch 87.7836%-122 - C1 -4B9D 5.2 NEK1_HUMAN
1 PsiBlast_PDB 84.2736%-126 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 83.9236%-129 - C1 -4B9D 4.5 NEK1_HUMAN
26 HHSearch 78.6431%-123 - C1 -2W5B - NEK2_HUMAN -
28 HHSearch 77.6931%-126 - C1 -2W5A 2.3 NEK2_HUMAN
6 PsiBlast_PDB 68.0131% -75 - C1 -2W5A - NEK2_HUMAN -
51 Fugue 66.0024% -19 - C1 -4DN5 - M3K14_HUMAN -
19 PsiBlast_PDB 62.5531% -76 - C1 -2XNO - NEK2_HUMAN -
15 PsiBlast_PDB 61.8431% -74 - C1 -2XKF - NEK2_HUMAN -
8 PsiBlast_PDB 60.8731% -72 - C1 -2XK3 6.1 NEK2_HUMAN
3 PsiBlast_PDB 60.5131% -47 - C1 -5DE2 - NEK7_HUMAN -
20 PsiBlast_PDB 59.9431% -71 - C1 -2XNP 8.9 NEK2_HUMAN
35 HHSearch 59.8430% -17 - C1 -4GV1 - AKT1_HUMAN -
10 PsiBlast_PDB 59.6431% -69 - C1 -2XK6 - NEK2_HUMAN -
17 PsiBlast_PDB 59.1831% -58 - C1 -2XNM - NEK2_HUMAN -
18 PsiBlast_PDB 58.4531% -71 - C1 -2XNN - NEK2_HUMAN -
9 PsiBlast_PDB 57.8831% -72 - C1 -2XK4 - NEK2_HUMAN -
12 PsiBlast_PDB 57.4631% -71 - C1 -2XK8 - NEK2_HUMAN -
30 HHSearch 56.9330% -75 - C1 -5J5T 6.1 M4K3_HUMAN