@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_30_3640: (2018-03-11 )
MGKSKKHGKPVKGASKKGSKHDKSKRKAKFIDPTSSVSRDVRETVAALVQEIEREEPVAEEKLQPLKKGKKCQEIAEKEGILVKTGMTKEQAHTIANRLKQQQSTTHRSDGEGDVGSDGGGDGDGGGTEEDYSDTANEPSREYRKGGYHHVVIGEVYNDRYRVVKKLGWGYFSTVWLVWDYQKERYQAMKIQKSAASYSEAAYDEIKLLSEIMEADPHKNRCCARLNDYFKHTGPNGTHVCMLFDVYGENLLSLMERYEYRGIPLPIVKCIARQVLIGLDHINSIDIIHTDLKPENVLLSTPKHSIISLMKHFHPPPLHQRPKLTERDPKTMTKSQRRRYYKKLAKEERKTLLGEDDGDHKSRGDEHGSNENGDADSEGSKTDPEWEVERFHHVILADFGNSCWTHKQFTDEVQTRQYRCPEVILGEPYSTPIDIWSCACMIFELITGQFLFDPKKGDDYSRDEDHLALMSELLGDLPESMRLGDGKYRSYYYNSKGDLRNIKDLQYWVLEDVLHQRHKFTKKKAKEIADFLLPMLEYAPDTRATPAAMLRDHDAFFDIQDDDYAPLCFVDEDSGDEEGSASDEEEEETDSDDSSQSYSSAPSSELTAKRSRQPDNDADRSDTFRYWEEHPILNRTYLEERGLTIADIQSVLAGNFLDDAAAHEAAAEVIRLLSEETDRLSNDHGSDGHEADNEDGGDGDNDDEEETTQGSEGPEKVVVGKAAPCDDGVDEDEETTDEEEEGSSDGAE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_8(1Q99)
SKY1_YEAST
[Raw transfer]



ANP_A_7(1Q99)
SKY1_YEAST
[Raw transfer]



ATP_A_8(1Q97)
?
[Raw transfer]



EDO_A_11(2X7G)
SRPK2_HUMAN
[Raw transfer]



ADP_A_12(1Q8Y)
?
[Raw transfer]



GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]



RXZ_A_25(5MY8)
?
[Raw transfer]



RXZ_A_25(5MY8)
?
[Raw transfer]



3UL_A_2(4WUA)
?
[Raw transfer]



PVB_A_2(2X7G)
SRPK2_HUMAN
[Raw transfer]



EDO_A_17(5MY8)
?
[Raw transfer]



ADE_B_13(1Q8Y)
?
[Raw transfer]



EDO_A_5(5MY8)
?
[Raw transfer]
3 PsiBlast_PDB 91.8142% 0 - C- -3BEG - -
6 PsiBlast_PDB 81.7141% -36 - C1 -5MYV - SRPK2_HUMAN -
4 PsiBlast_PDB 81.1442% -21 - C1 -5MY8 9.2 ?
1 PsiBlast_PDB 80.4642% -18 - C1 -1WAK - SRPK1_HUMAN -
21 HHSearch 80.0745% -23 - C1 -5MY8 9.0 ?
2 PsiBlast_PDB 79.8042% -23 - C1 -4WUA 5.8 ?
28 HHSearch 76.0931%-106 - C1 -4AZF - DYRK2_HUMAN -
23 HHSearch 75.9349% 1 - C1 -1Q99 5.7 SKY1_YEAST
5 PsiBlast_PDB 75.2941% -29 - C1 -2X7G 6.9 SRPK2_HUMAN
22 HHSearch 75.2449% 2 - C1 -1Q8Y 4.3 ?
29 HHSearch 72.1831% -34 - C1 -4YLL - DYR1A_HUMAN -
32 HHSearch 70.2531% -15 * C1 *4YU2 - DYR1A_HUMAN -
27 HHSearch 70.1530%-103 - C1 -5LXC - DYRK2_HUMAN -
31 HHSearch 69.8030% -44 - C1 -2EU9 - CLK3_HUMAN -
39 HHSearch 64.7628% -13 - C1 -4IIR - PRP4B_HUMAN -
44 HHSearch 64.2030% -48 - C1 -1Z57 - CLK1_HUMAN -
41 HHSearch 63.9927% -95 - C1 -3LLT - ? -
40 HHSearch 63.0230% -43 - C1 -5J1W - CLK1_HUMAN -
43 HHSearch 61.6128% -13 - C1 -4IJP - -
15 PsiBlast_PDB 55.0724% -31 - C1 -5J1W - CLK1_HUMAN -
9 PsiBlast_PDB 45.6051%-140 - C1 -1Q97 2.6 ?
7 PsiBlast_PDB 44.6851%-146 - C1 -1Q8Y 2.7 ?
10 PsiBlast_PDB 44.3751%-140 - C1 -1Q99 2.0 SKY1_YEAST