@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_31_3300: (2018-03-12 )
MSAFSSVLGAPGATGDVKYVKKKLIGTGSYGEAWLVERASDKAIFVAKTMDLGKMSSRDRTYAYSEIKCLASCHHPNIIKYIEDKEDNEHLLIVMEFADSGDLDRQIKARATDFKHFQEHEALFLFLQLCLALDHIHGHKMLHRDIKGANVLLTSTGLIKIGDFGFSHQYDDTVSGVVANTFCGTPYYLAPELWNNQRYSKKADVWSLGVLLYEIMALKRPFTSTNMKGLMAKVLSGDYEPLPEVYSADFRDVVRKILVCDAAQRPSVRDIFRFPYVREGLKVFMHTMKKNSRIDNEVKDALMEHVTEILSSESVEVPKSTPVGQINKDVFFSGYLNKLKGGDNHSWKRRYLQVQKGHFIMSDKESDTEGKALSLEHIQSVCPVPVSTAKREHVFALHTTSGKSMWFEAASLENMEEWIHAIQCGLGVA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]



4SP_A_2(5M57)
NEK2_HUMAN
[Raw transfer]



NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]



ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]



24R_A_3(5EAK)
MARK2_HUMAN
[Raw transfer]



5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]



EDO_A_17(2XNO)
NEK2_HUMAN
[Raw transfer]
1 PsiBlast_PDB 90.8739%-149 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 90.2139%-148 - C1 -4B9D - NEK1_HUMAN -
3 PsiBlast_PDB 72.9638% -38 - C1 -2W5A 5.3 NEK2_HUMAN
15 PsiBlast_PDB 72.5232% -90 - C1 -2QNJ - MARK3_HUMAN -
25 HHSearch 72.4229% -45 - C1 -4WOT - ROCK2_HUMAN -
9 PsiBlast_PDB 71.8838% -26 - C1 -2W5B 4.5 NEK2_HUMAN
16 PsiBlast_PDB 70.9731%-109 - C1 -5ES1 - MARK4_HUMAN -
7 PsiBlast_PDB 70.1938% -22 - C1 -5M51 5.6 NEK2_HUMAN
11 PsiBlast_PDB 70.1638% -27 - C1 -5M57 5.6 NEK2_HUMAN
8 PsiBlast_PDB 69.2338% -76 - C1 -2JAV 5.8 NEK2_HUMAN
19 PsiBlast_PDB 68.1332% -99 - C- -2R0I - MARK2_RAT -
4 PsiBlast_PDB 67.7838% -26 - C1 -2XNM 5.9 NEK2_HUMAN
36 HHSearch 66.7927% -86 - C1 -4XBR - INKA1_HUMAN (first) -
17 PsiBlast_PDB 66.7732% -93 - C1 -5EAK 7.1 MARK2_HUMAN
45 Fugue 66.0524% -46 - C1 -1TKI - TITIN_HUMAN -
28 HHSearch 64.7129% -35 - C1 -3C0G - CSKP_HUMAN -
35 HHSearch 64.3527%-112 - C1 -5K00 - MELK_HUMAN -
5 PsiBlast_PDB 64.1338% -23 - C1 -2XNO 4.8 NEK2_HUMAN
29 HHSearch 63.8029% -41 - C1 -3C0I - CSKP_HUMAN -
18 PsiBlast_PDB 63.6932%-101 - C1 -1ZMU - MARK2_RAT -