@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_32_1900: (2018-03-12 )
MGGGLSKSQLNVHYQGATEVESTYIVTKTDPNNNVVGAASATKPLSVVDAQWARNATEPGRDGVAVSAAAAAAAAPRKEEARGLGTAPARAGSALDGVGGNRGTNSATSAVDDNGSPIPIRNGGSHVGYICLSDIIGDKDSHSKYIKISSIGRGAYGEAYVVKRNPAYDAAARPMVEAQIQSNALANPTQPNGLYVAKIMDLRAMVSQDRQYAQTEIMCLAHTHHFAIIRYYEHYVLDSDDETVVIVTELADHGDLRRNLYNASAVRPFLEAGSQATTGGNAGTNDSRMLLTEREAGTYFVQLLLALHHISARRMIHRDIKSANVLLTSRGFLKLGDFGFSQKYESTVSSETIAGTFLGTPYYLSPEMWKGKRYGKKADVWAAGVVLYEMLMGGRRPFEAASLPELRMCVLEEEFVPPTGPPTSGAADVNSQEGGQPKFSNDMRELLVAIFQKAPEKRPSAEELLHKPVMQHYLYVFEKYVHSLISYDAAALAANPTMDRQGLYFADPGDQAMVLQGIAEGKAAIQQVTKRTISENASARFEGVVYKDNHNGVWKERYLLLDGATLTISLSKGKEAVGGGERSKRVLLSSIKSVSPCEVEDAHVRVVNAASPSDGYKPPYAFAIAMHSSNSIVFGVASAEELDHWMQALMRALQID

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]



5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]



VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]



T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]



BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]



WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]



EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]



30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]



OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]



4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]



ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]



WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]
50 Fugue 67.4520% 19 - C1 -3C4Z - RK_BOVIN -
1 PsiBlast_PDB 62.9830%-122 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 61.9830%-121 - C1 -4B9D - NEK1_HUMAN -
26 HHSearch 59.4529% -67 - C1 -5J5T - M4K3_HUMAN -
44 HHSearch 57.2827%-110 - C1 -5K00 - MELK_HUMAN -
51 Fugue 55.3424% 7 - C1 -4AW2 - MRCKA_RAT -
27 HHSearch 55.2729% 3 - C1 -2Y7J - PHKG2_HUMAN -
42 HHSearch 54.5028%-109 - C1 -4XBR - INKA1_HUMAN (first) -
45 HHSearch 53.7429% -34 - C1 -3V8S - ROCK1_HUMAN -
25 HHSearch 52.6330% -39 - C1 -4WOT - ROCK2_HUMAN -
28 HHSearch 52.1629% 6 - C1 -2Y7J - PHKG2_HUMAN -
33 HHSearch 49.2325% -61 - C1 -2BDW - KCC2D_CAEEL -
6 PsiBlast_PDB 48.3530% -89 - C1 -2W5A 3.4 NEK2_HUMAN
15 PsiBlast_PDB 48.3430% -93 - C1 -2XKF 4.1 NEK2_HUMAN
23 HHSearch 48.2725% -57 - C1 -2X4F - MYLK4_HUMAN -
4 PsiBlast_PDB 48.1832%-139 - C1 -2WQN 3.7 NEK7_HUMAN
46 Fugue 48.1319% -32 - C1 -1TKI - TITIN_HUMAN -
5 PsiBlast_PDB 47.8532%-140 - C1 -5DE2 - NEK7_HUMAN -
18 PsiBlast_PDB 47.7530% -78 - C1 -2XNN 3.6 NEK2_HUMAN
32 HHSearch 47.2926% -21 - C1 -4GV1 - AKT1_HUMAN -
10 PsiBlast_PDB 47.2530% -88 - C1 -2XK6 4.5 NEK2_HUMAN
8 PsiBlast_PDB 47.0430% -86 - C1 -2XK3 4.3 NEK2_HUMAN
12 PsiBlast_PDB 46.7530% -86 - C1 -2XK8 5.1 NEK2_HUMAN
20 PsiBlast_PDB 45.5630% -90 - C1 -2XNP 5.7 NEK2_HUMAN
13 PsiBlast_PDB 44.4030% -86 - C1 -2XKC 4.8 NEK2_HUMAN
11 PsiBlast_PDB 44.3930% -85 - C1 -2XK7 4.2 NEK2_HUMAN
9 PsiBlast_PDB 44.3830% -85 - C1 -2XK4 4.5 NEK2_HUMAN
19 PsiBlast_PDB 43.4630% -86 - C1 -2XNO 3.3 NEK2_HUMAN
7 PsiBlast_PDB 43.4630% -91 - C1 -2WQO 4.8 NEK2_HUMAN
14 PsiBlast_PDB 42.9230% -68 - C1 -2XKD 4.7 NEK2_HUMAN
16 PsiBlast_PDB 41.3230% -66 - C1 -2XKE 4.4 NEK2_HUMAN