@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_33_2100: (2018-03-12 )
MAEAIPISSQQVSDNGEVELQFKDILGPIGCKTCKYERVRELGSGSFGKALLVRRVSDGQLLVAKRMDLAAMSEKDTKYATAEIQCLASCDHFAIIKYYEDYVAEPHMLIIMEFADAGDLNMQIKQRAKAGFIYFEEHEVGYTFVQLAMAVDHIHRRRMLHRDIKGANVMLMTNGVIKLGDFGFSHQYENTVSDQVAQTFCGTPYYLAPELWNHQRYSKKADVWAMGILLFEMMALRRPFVGQGMRALSEAVMSNRRDCELPQQYSRSLKDLCNIMLRTDPNQRPSCAQLFKLPHMMKLLLDFGTSVDNSQLVSDALKKKIHANICEIRDTSVNDPETFTFVGHVGTVSSSVFYEGYVRKESGKTWKERFLVLRDGGLVISRHKGDKETKPLPVTFINSAVFVPEQSACSTGVFAINLADTKTMWFQALPPETAEIWVHKIQQSIGVS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]



5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]



OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]



WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]



BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]



EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]



430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]



WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]



ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]



ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]



NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]



EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]
2 PsiBlast_PDB 75.7833%-147 - C1 -4B9D - NEK1_HUMAN -
1 PsiBlast_PDB 75.1833%-149 - C1 -4APC - NEK1_HUMAN -
56 Fugue 73.2221% 26 - C1 -3C4Z - RK_BOVIN -
55 Fugue 72.2521% 13 - C1 -2ACX - GRK6_HUMAN -
34 HHSearch 64.5030%-122 - C1 -5K00 - MELK_HUMAN -
18 PsiBlast_PDB 64.4033% -32 - C1 -5M51 6.2 NEK2_HUMAN
3 PsiBlast_PDB 64.1833% -37 - C1 -2W5A 5.1 NEK2_HUMAN
47 HHSearch 60.6427%-108 - C1 -4XBR - INKA1_HUMAN (first) -
14 PsiBlast_PDB 59.9933% -40 - C1 -2XNM - NEK2_HUMAN -
53 Fugue 59.5721% -59 - C1 -1TKI - TITIN_HUMAN -
39 HHSearch 59.2828% -88 - C1 -5J5T - M4K3_HUMAN -
11 PsiBlast_PDB 58.6033% -33 - C1 -2XKD - NEK2_HUMAN -
12 PsiBlast_PDB 58.5433% -36 - C1 -2XKF 6.0 NEK2_HUMAN
17 PsiBlast_PDB 58.4533% -45 - C1 -2XNP 8.4 NEK2_HUMAN
16 PsiBlast_PDB 58.0233% -42 - C1 -2XNO 5.7 NEK2_HUMAN
6 PsiBlast_PDB 57.9633% -39 - C1 -2XK4 6.7 NEK2_HUMAN
8 PsiBlast_PDB 56.6733% -41 - C1 -2XK7 - NEK2_HUMAN -
49 Fugue 56.5620% -46 - C1 -1KOB - ? -
15 PsiBlast_PDB 56.0333% -37 - C1 -2XNN 5.7 NEK2_HUMAN
42 HHSearch 55.4028% -36 - C1 -3C0G - CSKP_HUMAN -