@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_34_1910: (2018-03-12 )
MPQDARLQPFSLVGIEATVRPEQRRWSAGKRSGTHGRPLERFFLFLFLAALALCSVCCSQASSAPFHPARHIVADEALSNAPSARSVALRYTFPGSSLALLVTEGGHLHAYDLERGQHAWCADAGGDMVTVTIDLPPSKEAALRDPLALPFLVRGNSLFTRVPFFTYTPLESMDATERLEGLPQSLRPYFFMNISTLLRRQTLFLGGTDVYVTTSVQVADLDASTGRPVGGLETPSQAFCGSNATRSPPRGDSTTESHRVPHNELLPLLHIVRYNIVLHVVRPGEYSWSICLSQLRMSPRAVVQPRFPSPFSAHSAADTSSAAPEDDSEHTPRFFSQFMRNMFDYDDEHVVNVAYRRAADQQANPTPAARTSTAVLMRNLQRTHTQAADYISRVVSVHQVNESHVSLRSVHDGTTAWTSALPHVAREPSGDGTGSTTSSSNATSTVIAAYVWVSGADEIFRVPVLRLAFGSVVEEAEQLRISMETDARGAVPTGLPRLTSASLAGALVPATHAAGRLQLWTLMQSGDSGRGRCRDGGACGEWATDDVEADEREETELAAYYHQCTWWETPPVSWPLLAGAFNGESGAVTFQAIDSATSSRTVAGTSGVYSTENPPLGFDSSGAVVKTGLAWRTAAFISFHVLCLAGSIAFLCAGVPPRGQLQRAWAQADRNRDRVSHTSSSHQPSTQLVPQDLLSPHGGRGTPFSLIMDSFSMDTLGLGTLPTASASMATVSLPHSDDSLQELMRHHQLGHLSRSPPRSPWVYPAPEQVRSLTYEESEKMLPVTATPATTTTTKGTATSSKAGFGMTPSTARQKAKTSETPVKRAAALPSSPADSAAADKAAASASNSSSDDDTVDIDLGERWWLRAQFLPRQHASAPALDETFSDRGSSYSRSQANTGTEEEGKLFQLHFKVLEKIGFGGEGSVFCVEHRVTHARYAIKVIHIHEKDEERVVQEAVLHSSFDNANVVRFYFCWIEDIAVSTANRLELCHRDEDGLDATSLAYSDNSLMVSTSGNTNGHSTDHDTASKAGDTYHMLFIQMEYFPRGTLADWLRLRSGFFRLEVLRYMKQIGEGLAYLHNQDVVHHDLKPTNIFVSNDNVLKIGDFGLAKRRGNANGSAGDLASNVAGGQEERSVVGGSPLYSSPEQTRGEPVNKPSDIFSLGIIAVEMLCTFTTLHERIRILTDAHQLILPEELEAEFPDEAQLIKSMLAANPLQRPPIRKLLRQISKLIVALEAQESDEEAEKPPPPSPLDGAEHSESRNGNDEAATVALVDDSASALAAATATGKFGNTPLSTSVTAASSSCGRSVAADLASGSHVDSFPSPLGEQKSRVALLPVLHSEAATGISAAAASHMPATTSAHDSNAASTGKHVTRLGDSLASLHASTMVKRGNTYHHRRRGSASPNMEAEIGRLHICEMVATGSASRKEFFANDPYGLPNTPVMYTEDADLSTILKHDLQDRTVSAPD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_9(2A19)
E2AK2_HUMAN
[Raw transfer]



ANP_A_5(1ZY5)
GCN2_YEAST
[Raw transfer]



ATP_A_7(1ZYD)
GCN2_YEAST
[Raw transfer]



GOL_C_3(1ZY4)
GCN2_YEAST
[Raw transfer]
14 PsiBlast_PDB 74.2330% -65 - C1 -1ZY5 5.2 GCN2_YEAST
13 PsiBlast_PDB 73.6230% -65 - C1 -1ZY4 2.3 GCN2_YEAST
50 Fugue 72.1121% -19 - C1 -4AW2 - MRCKA_RAT -
15 PsiBlast_PDB 69.3529% -58 - C1 -1ZYC - GCN2_YEAST -
16 PsiBlast_PDB 69.1729% -66 - C1 -1ZYD 4.6 GCN2_YEAST
17 PsiBlast_PDB 68.5628% -63 - C1 -1ZXE - GCN2_YEAST -
5 PsiBlast_PDB 63.9428% -39 - C1 -4X7J - -
6 PsiBlast_PDB 63.9328% -33 - C1 -4X7K - -
7 PsiBlast_PDB 63.6828% -34 - C1 -4X7L - -
8 PsiBlast_PDB 63.3528% -31 - C1 -4X7N - -
40 HHSearch 63.3222% -89 - C1 -5T18 - -
1 PsiBlast_PDB 62.8230% - - C1 -3QD2 - E2AK3_MOUSE -
3 PsiBlast_PDB 62.6129% -33 - C1 -4G31 - -
4 PsiBlast_PDB 61.9029% -34 - C1 -4M7I - -
2 PsiBlast_PDB 61.6329% -20 - C1 -3UIU - E2AK2_HUMAN -
10 PsiBlast_PDB 60.2428% -31 - C1 -4X7H - -
23 HHSearch 60.0323% -71 - C1 -4G3F - -
11 PsiBlast_PDB 58.9628% 5 - C1 -2A19 5.3 E2AK2_HUMAN
12 PsiBlast_PDB 58.1128% 8 - C1 -2A1A - E2AK2_HUMAN -
9 PsiBlast_PDB 57.2528% -37 - C1 -4X7O - -