@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_35_0480: (2018-03-12 )
MQLVSRTMSWNTTSFFTGSLDLEDEVKVLGDYVVGHRLGEGAYGSVYVVKYLPSGDRFALKILQKQDLFTSSGIYPVAYYDADGGASPWEADGVESHPLGGAPVPTVAALAKTFEQQIISEAMVMQALEHPHVVKFYKFLNSTTAFYFVMELAEGGKLLDLILSKSYFAEDEARMYFQQLLSAIDYCHRNGVAHKDLKAENLLLSDDGRLLVCDFGFSSKIAKENIDDPEQTIGTGGNAALLDAINNGGMFGTLHYTSPEAVMASSQQWKLAFAGDMAVPAETLGVPEDQHQGDPARYSPSSTATPWSSFSTSSSAASNASSCSGSLARGWRRRAAEVVSSKHCKARGKISGKGSGASLRTSNSTSLTDEAGAAHKPSVEKRRARPDSLTPLPSAAEAAAPGSSLQRAGSTHSLASATNGHRHKWVSPTSGLNKVGEGLSILVKSLMGSSGSSSGGHHHHHHRHDSHARSGHAKSPQGKQAAIIVPSSADAKAKLKRSSSTAALSVDGEAEEGNSRLHQPLRHLRTNAPSQARVPSPLSGASPSVSPTTSSFASPRFHESVAAAAACIADSPSATGAEKPSTLSSPAGSPTDSKSAITSPARHRPGTKDDIAVSDTNVGELGPPVTAFDRDAVGAPPLPLPVPPTTASTLKTPNSSSASPQALHHCHQAHEHKHHHRHRQRRSNSSSQIFGASTPCKSQPIIVDPFQQDLWSAGVILFFMLTGRLPFEGRDEEETLHLIQVNEFAFNDEEAQRISPAARRLVAQMLAPEPTDRPTIEQIIANPWFRRDLQLEKDFPHRKDLMEALGSASPDSALRHPLPQKSAKGAGPAADACAGPSGADRGGDTRAWMSTSHGVPSSCGSNATNAVAVSPRFHSFTPDVRAPVPLVPSHNTSFNVGPSAHPGGAPGSSPGSDQHRDASAHTTCNFLDFSTHHSITPEEEWVLETAFRKVDSDGYGCITRDQVRDMLTTLHGDVVPTKDVDELVCLFTGDASAASITFQQFRDAWVSKDLAHTPFTHNSEFQLVNIIGTEMDAVERGVVRQLRTAFNSLDENHRGVIQLHQVQRVFEKCQIAVHKEECLSFIKYFHESELACCHNRASLYSQRRGPAPNTMSLLHASGAASPRGFAKVHSLPSATGATQGGSPATTHYSATTPKQPSETGDSDTATITAAAGGTTYTGSQATSRGAPKSPLSPSSITVSFNSFVRGIVKSDILLKHPLGRKLAAATNLAALFQSRNVTECVRHGFLVTGLQSVILTKLASMPERLQLLYSDKVVSNAANVYSFRYLGSSSLATMPTTSTATPPMSSPLVAMAASTDPAATCSPIGLQGSFSAQHRNHATPAVSSLQRRTVSSDAGNGATGSTAATSNAGTHPHNPSPCLSDRSTVRSHATCTKPSSASPHSLARADSPGSAMHSPSPEISGSTLTSCGAFVSQSQRSPAVPMHRSSSRPRATGGTSAHRMASRSASARGAAPSHPVALCCPSNSLQHTPTSLCARRRHLRGQDAHTDPRHDTVRDGDGVRDNTRGFSSCPHNSSSAVNTAIDDSHSKRSRSALSPGMGEELKGPNTTPAAGGQRRVKENVTQLPFPSISSAVAILSTTSATLAHPGVAYSSSDAVTLVNGVCDLDVILSPASLGYTMVQFRCIHGKTSDFHEAVAFISNVLEVEREQAMQDTMTRGESELM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

STU_A_5(4CFH)
AAPK1_RAT
[Raw transfer]



STU_A_4(4RER)
AAPK1_HUMAN
[Raw transfer]



CPS_A_5(4CZU)
CIPKN_ARATH
[Raw transfer]



EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]



CPS_C_16(4CZU)
CIPKN_ARATH
[Raw transfer]
45 Fugue 84.9323% - - C1 -3H4J - SNF1_SCHPO -
3 PsiBlast_PDB 62.6731%-144 - C1 -4D28 - CIPKO_ARATH -
2 PsiBlast_PDB 61.3633%-106 - C1 -4CZU 5.5 CIPKN_ARATH
5 PsiBlast_PDB 61.1431%-152 - C1 -4ZHX - AAPK2_HUMAN -
6 PsiBlast_PDB 61.0631%-144 - C1 -5ISO - ? -
10 PsiBlast_PDB 60.6631%-150 - C1 -5EZV - AAPK1_HUMAN (first) -
27 HHSearch 60.0535%-130 - C1 -4YSM - ? -
15 PsiBlast_PDB 59.9928%-142 - C- -3FE3 - MARK3_HUMAN -
4 PsiBlast_PDB 59.4528%-146 - C1 -3IEC - MARK2_HUMAN -
8 PsiBlast_PDB 59.0931%-145 - C1 -4CFE - AAPK2_HUMAN -
9 PsiBlast_PDB 58.7331%-145 - C1 -4CFF - AAPK2_HUMAN -
19 PsiBlast_PDB 57.3330%-155 - C1 -4RED - AAPK1_HUMAN -
17 PsiBlast_PDB 57.2330%-137 - C1 -4RER 8.6 AAPK1_HUMAN
1 PsiBlast_PDB 57.1833% -88 - C1 -4CZT - CIPKN_ARATH -
26 HHSearch 57.1735%-109 - C1 -3NYV - ? -
30 HHSearch 56.5632%-133 - C1 -2WEL 2.8 KCC2D_HUMAN
44 Fugue 56.5117% 32 - C1 -1KOB - ? -
18 PsiBlast_PDB 55.6530%-141 - C1 -4CFH 8.2 AAPK1_RAT
29 HHSearch 55.1631%-121 - C1 -4Y5Q - ? -
33 HHSearch 54.8927% -76 - C1 -2Y7J - PHKG2_HUMAN -