@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_35_5330: (2018-03-13 )
MQKYQILGKKGEGTFSEVLRAQDIKTQQYVAIKCMKKAFKSKEQVNRLREIQAVRRLQPHPNIVDLVEVLFDRSTGRLALVLELMDMSLYELIKGRKQYLGEEKVRSYMYQLLKGLDHAHRIGVFHRDIKPENLLIDAEGHLKIADFGSCKGVYSKLPLTEYISTRWYRAPECLLTDGYYNYKMDLWSAGCVFFEIIALFPLFPGSNELDQVHRIHNVLGTPPTEILDRLKKFGTHMDYDFPKKQGTGLAKLLPHVSADALDLMKKLLTYDEEQRCTAKEALRHAYFSKLREADKKSHRPKHSASISRPTTVTDDAHASMGLGSSPRKTTNGMPSLNGTLTASRKLPVIDGKSPTKSSTLVSNQSTLHQVHGAVATSASGEDLVARSLPKLI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_D_4(1J1B)
GSK3B_HUMAN
[Raw transfer]



ATP_A_5(4EOM)
CDK2_HUMAN
[Raw transfer]



ATP_A_5(4EOJ)
CDK2_HUMAN
[Raw transfer]



ADP_A_4(3NIZ)
?
[Raw transfer]



1RO_A_5(4EON)
CDK2_HUMAN
[Raw transfer]



1RO_A_5(4EOL)
CDK2_HUMAN
[Raw transfer]



4SP_A_5(4EOK)
CDK2_HUMAN
[Raw transfer]



RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]



ALH_A_5(1UNG)
CDK5_HUMAN
[Raw transfer]



LZ9_A_4(5HQ0)
CDK1_HUMAN
[Raw transfer]



LZ9_A_4(4Y72)
CDK1_HUMAN
[Raw transfer]



CQ8_A_3(4ZZN)
MK01_HUMAN
[Raw transfer]



GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]



MPD_A_4(4YC3)
CDK1_HUMAN
[Raw transfer]



EDO_A_5(5G6V)
CDK16_HUMAN
[Raw transfer]
7 PsiBlast_PDB 84.8135%-133 - C1 -2QKR - ? -
20 PsiBlast_PDB 81.9833%-112 - C1 -3MTL - CDK16_HUMAN -
4 PsiBlast_PDB 81.7737% -10 - C1 -4YC3 2.8 CDK1_HUMAN
25 HHSearch 81.0234%-114 - C1 -5G6V - CDK16_HUMAN -
2 PsiBlast_PDB 79.9937% -6 - C1 -5HQ0 5.2 CDK1_HUMAN
1 PsiBlast_PDB 79.9937% -6 - C1 -4Y72 5.2 CDK1_HUMAN
39 HHSearch 79.8836% -85 - C1 -1UA2 - CDK7_HUMAN -
10 PsiBlast_PDB 79.0936% -15 - C1 -4EOM 4.0 CDK2_HUMAN
28 HHSearch 78.6236% -20 - C1 -5BYZ 2.3 MK07_HUMAN
11 PsiBlast_PDB 78.4536% -12 - C1 -4EON 5.5 CDK2_HUMAN
19 PsiBlast_PDB 78.4039% -2 - C1 -3O0G - CDK5_HUMAN -
15 PsiBlast_PDB 78.1136% -14 - C1 -4EOL 5.0 CDK2_HUMAN
26 HHSearch 77.9534%-102 - C1 -5G6V 3.0 CDK16_HUMAN
13 PsiBlast_PDB 77.7836% -16 - C1 -4EOJ 3.7 CDK2_HUMAN
21 HHSearch 77.3036% -28 - C1 -1J1B 4.1 GSK3B_HUMAN
18 PsiBlast_PDB 77.0139% -2 - C1 -1UNL 5.5 CDK5_HUMAN
3 PsiBlast_PDB 76.8537% 2 - C1 -5LQF - CDK1_HUMAN -
14 PsiBlast_PDB 76.6136% -16 - C1 -4EOK 5.1 CDK2_HUMAN
6 PsiBlast_PDB 76.0535% -51 - C1 -3NIZ 4.5 ?
8 PsiBlast_PDB 75.8640% -6 - C1 -1H4L - CDK5_HUMAN -