@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_36_0960: (2018-03-13 )
MADGYHNKPAAPKVGQRFGPYQVGDTIGRGTFAKVKIGYHETTKVRVALKIISRKLMESDARSALKIKREIKIMRVLRHPHITRLYDVVKTKHDIVLAMEYVSGGELFDYVTCKGRLEEPTARALFQQLTAAVAYCHRYRVTHRDIKPENIMMEHGCHSVKLSDFGLSSITHDGRFFETSCGTPNYASPEVVSGRLYGGPEADVWSCGVVLYAMLCGTLPFDDSNIALLFKKIQTADYAIPSHVSAQARDLLHRVLVVNPLERATMEQVMQHPWLRPDFPRYLLSLHFAAIVETTRFASTYYLTEDMLDEEVVRVVASRFRVSPQEVASIIMSEEERIPSMRAVISDEDNPNSMARRYPAANYFEMYSNVLDSKLWPTPVEIAAAEVALRDEAHDIYVSYVILTQKKQNKLAPQEHAANPSFGESANSLLQSQAQQGYGSLNANSLQQLTGNSSFTGLSFKETSSRSHTDASSSPASKKSNHHNGKTLQNLSSPLQHIMNSTVPAAPPGDPWQSGYNVVAAPFLPLHAKGATGTVLGQLLRVQELPVQLLMSRRITVKPVKKEASSTMFLSPGLPKSTPGFDCISDTGAAPTSMPTAPQGNLLQPQRSPTTRTRSAAPTLLHPHSKVEVGLSDPHSPIPTGRPMRSIGADARHNLATAGGETALDTLYHAETVTRFGNDFIRNGVAFVNSTSHETLQEVYEAMKEEGLLWKVIYDYYFSVVRYPNIKLQVKVYKTKSDEQLVDVKVSAQSGMAAYDVALSLLERLRTRAVNKRNTQIRESHASALTPDTT

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PV_A_2(5K00)
MELK_HUMAN
[Raw transfer]




6Z5_A_3(5KZ8)
MARK2_HUMAN
[Raw transfer]




24R_A_3(5EAK)
MARK2_HUMAN
[Raw transfer]




6Z2_A_3(5KZ7)
MARK2_HUMAN
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




16X_A_3(2X4F)
MYLK4_HUMAN
[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




STU_A_4(4RER)
AAPK1_HUMAN
[Raw transfer]




CPS_A_5(4CZT)
CIPKN_ARATH
[Raw transfer]




2 PsiBlast_PDB 91.5547%-142 - C1 -5EZV - AAPK1_HUMAN (first) -
1 PsiBlast_PDB 87.7947%-136 - C1 -5ISO - ? -
27 HHSearch 87.4247%-143 - C1 -4RED - AAPK1_HUMAN -
3 PsiBlast_PDB 85.4045%-115 - C1 -4RER 5.8 AAPK1_HUMAN
32 HHSearch 84.1152%-136 - C1 -3AQV - AAPK2_HUMAN -
9 PsiBlast_PDB 82.0952%-134 - C1 -3AQV 6.3 AAPK2_HUMAN
8 PsiBlast_PDB 81.8152%-138 - C1 -2YZA - AAPK2_HUMAN -
28 HHSearch 79.8047%-138 - C1 -4RED - AAPK1_HUMAN -
6 PsiBlast_PDB 79.5251%-148 - C1 -3HYH - SNF1_YEAST -
5 PsiBlast_PDB 76.8845%-132 - C1 -4RED - AAPK1_HUMAN -
23 HHSearch 75.8842%-122 - C1 -2QNJ - MARK3_HUMAN -
11 PsiBlast_PDB 75.4845%-138 - C1 -4D28 - CIPKO_ARATH -
22 HHSearch 73.7942%-114 - C- -3FE3 - MARK3_HUMAN -
13 PsiBlast_PDB 72.3743%-122 - C1 -2QNJ - MARK3_HUMAN -
4 PsiBlast_PDB 71.5651% -56 - C1 -3DAE - SNF1_YEAST -
18 PsiBlast_PDB 71.5043%-141 - C1 -5KZ7 8.0 MARK2_HUMAN
30 HHSearch 71.3042%-138 - C1 -5K00 11.4 MELK_HUMAN
19 PsiBlast_PDB 70.2643%-133 - C1 -5KZ8 8.0 MARK2_HUMAN
20 PsiBlast_PDB 69.7843%-117 - C- -3FE3 - MARK3_HUMAN -
17 PsiBlast_PDB 69.5243%-134 - C- -2R0I - MARK2_RAT -
15 PsiBlast_PDB 69.3343%-122 - C1 -5EAK 7.8 MARK2_HUMAN