@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_36_5580: (2018-03-13 )
MSHFCSSLSRTPPRGGAISMPRDLSQTPAISRLGSTVKTPHIQKCVVDQTEDDDHPLEHMTVYFEEEDLRLVTTGLLGKGGFGKVFDAVSNSGEAYALKVSSKRMSENDWKRLKEEVTLMSHFSRHPNIVKFYAAGRDEDRAYVVMERCAGKSLHDVIASRGLDVPEILWIGWALVNTISYIHSKGCIHRDLKPQNLLFDHEGNLKITDFGLSSRISEAHPRKTVAGTAMYMAPEMATEVYKRMTKNSDAPSLSYGKEVDTWSIGVVLYVLLTRMNPYLEAIEQKGMRQLDKEHKSLALFNAVAGAAWSWPREWRGDPQLCRLVERVLHREPSQRATLMEVLEDSVWNRRPLSCPLSLLQKLNLLEPSPSSGLPLNNLAENLQFRPKRSAEAVLREGLERIEATEQRGRAQLELEYYETYNVLWCLLTLARAEEDARADILQSEEVQRGKLRNQSLARQSARGRCGSVSLVSEVADREVAASRTSRSVRRSVSLTEQEQGRLVRSSPVQYAVVYPGRDTATRWNLRAVVSLPRDMTAEIEREFKCMNGHVMTKLTSMPHGYNGFDCNVCDRGILKITGESPAFRCYKCDYDVCMKCAYSGKFKDVNFVCVTCAKRFTSTAKLQGHTLRCRGPSESPSPRRSSRMNTMLWDEPKRPSLLEVQLPEAPQSEPKLRASRCRSGRPTYNRTSTGGRISIGDPNAHSVVDFDAMVAEHREADFPKVSARASATGRESSQKRERAGSRRGRPSTSSSGSLSLDLPPQVQVPSKESRAQVQPRSSAELRDIMEEVEQRKQALPRDPLLSGPATPPQYNCNGEIIGIAARRRAESLEMARAEVITIRAEVADRPRELQHQPRVPRSASSSRAEKGLQGSHKRRREEWKQSAHAPSPSGTAKRAAVEEHVAKHAIMPPQVPRGRAQQSRAPSVSGHTAQGGPPLPRRGPAAPFPAAALKAHLGAFQVPAAIPPKNFASILPSRYSMTNAMAPTCNTSTTRPADGAGAAAADLGRGGAPTYSHVLGRPNGAFLALPREERNRQQFLDDFLSGGWVRFYSFTNEDTVVMYYSLQPGRYGAMFPTEAGVGTAVLDVYSKLVLYVPCMNNESTNRSQPHPHVQTFYDEEARILSLPEAQRYLGGVLRCITGFVDEFSRLKAEGLTPAAVHAAYIHHRSMSHVPRDTKFVYIRKVFPDPSGSFTLFRLSNLRSQVVCNAMVDIRWQSDRRHNVGQKYYINADGTAEPFLVDQTGILSQLETVLNNNFRR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CPS_B_12(4CZT)
CIPKN_ARATH
[Raw transfer]



ANP_A_2(4BFM)
MELK_MOUSE
[Raw transfer]



ADP_A_7(2RIO)
IRE1_YEAST
[Raw transfer]



0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]



OT5_A_2(4CQG)
MELK_MOUSE
[Raw transfer]



GOL_A_6(4GV1)
AKT1_HUMAN
[Raw transfer]



EDO_A_4(2J0I)

[Raw transfer]



EDO_A_5(2J0I)

[Raw transfer]



CPS_D_23(4CZU)
CIPKN_ARATH
[Raw transfer]
21 HHSearch 73.5530% -11 - C1 -4CZT Error CIPKN_ARATH
44 HHSearch 71.6930% 1 * C1 *4GV1 7.1 AKT1_HUMAN
38 HHSearch 71.6331% -16 - C1 -4XBR - INKA1_HUMAN (first) -
15 PsiBlast_PDB 70.6030% -33 - C1 -2CDZ - -
13 PsiBlast_PDB 69.6130% -36 - C1 -4JDI - PAK4_HUMAN -
43 HHSearch 68.8126% -23 - C1 -4WOT - ROCK2_HUMAN -
12 PsiBlast_PDB 68.7930% -36 - C1 -4JDH - ? -
14 PsiBlast_PDB 68.4930% -35 - C1 -4XBU - PAK4_HUMAN -
22 HHSearch 68.3730% -9 - C1 -4CZU 3.0 CIPKN_ARATH
17 PsiBlast_PDB 68.1630% -29 - C1 -2Q0N - -
8 PsiBlast_PDB 68.0930% -36 - C1 -4FIG - ? -
4 PsiBlast_PDB 67.8530% -36 - C1 -4FIE - PAK4_HUMAN -
7 PsiBlast_PDB 67.5930% -34 - C1 -4FIF - PAK4_HUMAN -
16 PsiBlast_PDB 67.4130% -30 - C1 -2J0I 3.6
10 PsiBlast_PDB 67.3830% -31 - C1 -4FII - PAK4_HUMAN -
18 PsiBlast_PDB 66.8430% -29 - C1 -4XBR - INKA1_HUMAN (first) -
49 Fugue 66.0120% -2 - C1 -2RIO 3.4 IRE1_YEAST
48 Fugue 64.6925% 25 - C1 -5KCV - AKT1_HUMAN -
53 Fugue 62.8618% 28 - C1 -2ACX - GRK6_HUMAN -
5 PsiBlast_PDB 62.4029% -15 - C1 -3D5U - ? -