@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_02_0260: (2018-07-12 )
MEERFDWMTFGDDVSGAQAGSAAPPSTGADEDVPIFLREDVGMVRAGASHATAASESTGVDSENGAPAFLAVCPGADVAPRLSGGWSSEGSPVWDGSLRQQQKPSSTAALGHPGGAGDVQAAPSAALYADQPSAAVLHFTGDSGRSWGALHRVRILGKGSYGCATLYSMKDAASGGVEPTHAVVVKDINMQTMLNPAEEVLAVQNELKVLRTVLGHPNLVQYVDALFDTRPPTYPMSFIMMEYCAGGDLAAVMDGRRSDSATTNGAPSSPPSIPLAITTASTAAGPDILTEPCVASLFIQVAVALQSLHTEYGILHRDVKPHNIFLLEDGITVRLGDFGISTQLDRVGDTAKEACGSPYYMAPELFEERAYGAAADVWSLGVVFYQLIARQLPFTAASAAELRSLVCRGRCTPLHDLQNEAASRYSRQFKELVSSLLTVDAAARPTLRRVLRHKYVRESLKYVPASVLTAKKPLPPARVPSAGAMPSSSLQRFSADGLYAGLFGSDVVEQAVSQAVHAGVYPIVSRVHSA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




4SP_A_2(5M57)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




IPW_A_3(5KBR)
PAK1_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




EDO_A_5(4RA5)
KPCT_HUMAN
[Raw transfer]




4PV_A_3(4ZLO)
PAK1_HUMAN
[Raw transfer]




EDO_A_6(4RA5)
KPCT_HUMAN
[Raw transfer]




51 Fugue 73.1719% 8 - C1 -3C4Z - RK_BOVIN -
25 HHSearch 61.2328% -22 - C1 -2Y7J - PHKG2_HUMAN -
48 Fugue 59.5720% -10 - C1 -2ACX - GRK6_HUMAN -
27 HHSearch 59.5128% -21 - C1 -2Y7J - PHKG2_HUMAN -
42 HHSearch 58.2126% -79 - C1 -4WOT - ROCK2_HUMAN -
24 HHSearch 58.0427%-126 - C1 -4XBR - INKA1_HUMAN (first) -
35 HHSearch 57.7228%-119 - C1 -4GV1 - AKT1_HUMAN -
1 PsiBlast_PDB 57.4831% -53 - C1 -2W5A 5.6 NEK2_HUMAN
43 Fugue 57.0722% -66 - C1 -1TKI - TITIN_HUMAN -
7 PsiBlast_PDB 56.0931% -45 - C1 -2W5B 5.0 NEK2_HUMAN
15 PsiBlast_PDB 55.7427% -49 - C1 -5KBQ - PAK1_HUMAN -
30 HHSearch 55.5026%-125 - C1 -4RA5 3.3 KPCT_HUMAN
5 PsiBlast_PDB 55.3531% -51 - C1 -5M51 7.0 NEK2_HUMAN
13 PsiBlast_PDB 55.1727% -46 - C1 -5DEY - PAK1_HUMAN -
44 Fugue 54.5721% -6 - C1 -1KOB - ? -
9 PsiBlast_PDB 54.4931% -50 - C1 -5M57 6.7 NEK2_HUMAN
10 PsiBlast_PDB 54.1027% -49 - C1 -4O0R - PAK1_HUMAN -
14 PsiBlast_PDB 54.0127% -43 - C1 -5DEW - PAK1_HUMAN -
20 PsiBlast_PDB 53.2926%-135 - C1 -4I6H - PLK2_HUMAN -
31 HHSearch 53.2127% -61 - C1 -3C0I - CSKP_HUMAN -
2 PsiBlast_PDB 49.3831% -32 - C1 -2XNM 8.1 NEK2_HUMAN
3 PsiBlast_PDB 47.6231% -57 - C1 -2XNO 6.7 NEK2_HUMAN
6 PsiBlast_PDB 47.2531% -50 - C1 -2JAV 6.7 NEK2_HUMAN
4 PsiBlast_PDB 44.9731% -53 - C1 -2XNP 9.2 NEK2_HUMAN