@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_06_1220: (2018-07-12 )
MNQNPAAQAGDKVPNMSNARRGETSDDYARHKAAASRAFLENHYQSLLANTRNGVGRAVGPRQKEPSFSDFHLFKCIGRGAFGEVFVCKYKSDKTDTLYALKRLRKSDMITKKQVVHVRSEKDVLAEAAASNPWVVHLYRSFQDSLYLYMVMEYMPGGDMISWLCDKGIFDVESTRFYIAELCAAVASVHDMGFVHRDIKPDNILFGESGHIKLSDFGLSKRFVEKRGNLLDYDDPSSSSNGAEASADEKSAYESRTDAPSGSPSGDGAGTGIAHGRVREMFQSIVGSPGYIAPEILLRKPYGVGCDWWSVGVIMYEMLYGIPPFFSQNPNSTCHKIKNWREHLVFPPQRHIPDDAVDFMKRLICEPEKRMTYDEICHHDFLKPMDMNGLLKLQAPYVPALSNRLDTKYFPEIKEPSAPMQQSEEQKVREVDPRGVMFADFRFNYSGDQAGPASA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4WB8)
KAPCA_HUMAN
[Raw transfer]




ADP_E_6(1RDQ)
KAPCA_MOUSE
[Raw transfer]




6U1_A_3(5KKS)
ROCK1_HUMAN
[Raw transfer]




ADP_A_6(3C4Z)
RK_BOVIN
[Raw transfer]




ANP_A_7(2ACX)
GRK6_HUMAN
[Raw transfer]




ANP_A_5(2V55)
ROCK1_HUMAN
[Raw transfer]




4KK_A_3(4YVE)
ROCK1_HUMAN
[Raw transfer]




5VS_A_3(5F9E)
KPCT_HUMAN
[Raw transfer]




SS5_A_3(2UZV)
KAPCA_BOVIN
[Raw transfer]




AQ5_A_5(5OTF)
?
[Raw transfer]




4TW_A_3(5BML)
ROCK1_HUMAN
[Raw transfer]




GOL_A_4(4GV1)
AKT1_HUMAN
[Raw transfer]




65R_A_3(5HVU)
ROCK1_HUMAN
[Raw transfer]




M77_D_4(2ESM)
ROCK1_HUMAN
[Raw transfer]




AQE_A_2(5OTE)
?
[Raw transfer]




H52_A_3(3D9V)
ROCK1_HUMAN
[Raw transfer]




07U_A_2(3TXO)
KPCL_HUMAN
[Raw transfer]




3L0_A_3(4RA5)
KPCT_HUMAN
[Raw transfer]




HFS_C_3(2ETK)
ROCK1_HUMAN
[Raw transfer]




Y27_C_3(2ETR)
ROCK1_HUMAN
[Raw transfer]




EDO_A_5(4AW2)
MRCKA_RAT
[Raw transfer]




29 HHSearch 87.5043% 0 - C- -4LQQ - CBK1_YEAST -
28 HHSearch 86.5743% 0 - C- -4LQS - CBK1_YEAST -
45 Fugue 78.6735% 2 - C1 -4AW2 2.3 MRCKA_RAT
22 HHSearch 78.4039% -56 - C1 -3V8S - ROCK1_HUMAN -
21 HHSearch 78.2537% -65 - C1 -4WOT - ROCK2_HUMAN -
13 PsiBlast_PDB 77.9234% -53 - C1 -5HVU 7.8 ROCK1_HUMAN
39 HHSearch 77.3636%-104 - C1 -4WB8 9.3 KAPCA_HUMAN
2 PsiBlast_PDB 77.3534% -58 - C1 -3V8S - ROCK1_HUMAN -
8 PsiBlast_PDB 77.2834% -56 - C1 -3D9V 5.7 ROCK1_HUMAN
40 HHSearch 77.1636%-103 - C1 -4WIH - KAPCA_CRIGR -
5 PsiBlast_PDB 76.7834% -51 - C1 -2ESM 5.2 ROCK1_HUMAN
41 HHSearch 76.7135%-106 - C1 -1RDQ 8.4 KAPCA_MOUSE
3 PsiBlast_PDB 76.5834% -53 - C1 -3TV7 - ROCK1_HUMAN -
14 PsiBlast_PDB 76.4934% -56 - C1 -5KKS 7.9 ROCK1_HUMAN
6 PsiBlast_PDB 76.2934% -56 - C1 -2ETK 5.1 ROCK1_HUMAN
27 HHSearch 75.3532% -41 - C1 -4GV1 3.2 AKT1_HUMAN
23 HHSearch 75.1637% -43 - C1 -5OTE 6.3 ?
15 PsiBlast_PDB 75.0934% -57 - C1 -2V55 4.5 ROCK1_HUMAN
12 PsiBlast_PDB 74.9634% -53 - C1 -5BML 6.6 ROCK1_HUMAN
7 PsiBlast_PDB 74.7634% -53 - C1 -2ETR 4.6 ROCK1_HUMAN
44 HHSearch 74.3136%-101 - C1 -2UZV 6.6 KAPCA_BOVIN
24 HHSearch 73.9837% -47 - C1 -5OTF 7.6 ?
11 PsiBlast_PDB 73.9334% -38 - C1 -4YVE 6.7 ROCK1_HUMAN
25 HHSearch 72.0033% -90 * C1 *4RA5 5.9 KPCT_HUMAN
33 HHSearch 71.0733% -85 - C1 -5F9E 8.2 KPCT_HUMAN
26 HHSearch 63.0532% -85 - C1 -3TXO 7.1 KPCL_HUMAN