@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_14_1510: (2018-07-13 )
MEKYTKVKNIGKGNMGTCTLARNNEDGKYYVIKQVDLTRMSKKDRQQSLNEARVLSSLRHPNIINYVDSFLARKSDNLCIVMEYAESGDVCTRLKKNYGVNVPERQVLDWLIQLVLSLDYVHQRKILHRDVKTQNIFLTHENLIKLGDFGIARTLANTYDQAQTFVGTPYYLSPELILEQPYDHRSDVWALGVVLYEMLTLKHPFNAKDMKGLLQRILAVHYDPLPTVYSAELRDIVARMLVRDPAGRIKLDDILQIPIVRERIRQWLKEPDVVPQHYVRSLCKHHLLPDFQDEATAVPSTRSAARAAAAMAHEEWRTTSEATPAQTDGDVFARNDTGTRPHATPGGPFSIPSTAARAAASACTSSADNGSSDGVRPSMPALKPYSNLPQLGVAPPQLYAPQLPQIYPRVQSNNRAPSPSRLFRSPFSTPSLARSAALPISRQQGDLVGQSSPAPLPFQRPSARAKAPSRPYARPYVAQPHLSPSPAYLVAANPRKNPSDMRRQQGSRPSGPYLNPLFSAPRQMAPGCRPLAPPLPPPPDIKAMLQRAAAERARR

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




SAP_A_2(2W5B)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




5Z5_A_2(2JAV)
NEK2_HUMAN
[Raw transfer]




1 PsiBlast_PDB 87.2944%-139 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 86.1344%-139 - C1 -4B9D 4.9 NEK1_HUMAN
23 HHSearch 86.0646%-137 - C1 -4B9D 6.2 NEK1_HUMAN
24 HHSearch 85.7346%-136 - C1 -4APC - NEK1_HUMAN -
49 Fugue 70.6917% - - C1 -3QA8 - ? -
38 HHSearch 70.3640% -35 - C1 -2W5A 6.3 NEK2_HUMAN
3 PsiBlast_PDB 69.5738% -51 - C1 -2W5A 6.3 NEK2_HUMAN
35 HHSearch 69.2139% -33 - C1 -2W5B 5.1 NEK2_HUMAN
20 PsiBlast_PDB 68.2538% -44 - C1 -2W5B 5.1 NEK2_HUMAN
14 PsiBlast_PDB 67.6038% -55 - C1 -2XNM 8.0 NEK2_HUMAN
18 PsiBlast_PDB 66.6138% -51 - C1 -5M51 6.9 NEK2_HUMAN
11 PsiBlast_PDB 66.0238% -53 - C1 -2XKD 6.8 NEK2_HUMAN
19 PsiBlast_PDB 64.9038% -60 - C1 -2JAV 6.7 NEK2_HUMAN
12 PsiBlast_PDB 64.0638% -45 - C1 -2XKF 6.5 NEK2_HUMAN
15 PsiBlast_PDB 64.0438% -50 - C1 -2XNN 6.4 NEK2_HUMAN
8 PsiBlast_PDB 63.2038% -49 - C1 -2XK7 6.3 NEK2_HUMAN
13 PsiBlast_PDB 63.0238% -50 - C1 -2XKE 6.4 NEK2_HUMAN
16 PsiBlast_PDB 62.3838% -42 - C1 -2XNO 6.7 NEK2_HUMAN
6 PsiBlast_PDB 62.1438% -47 - C1 -2XK4 7.3 NEK2_HUMAN
17 PsiBlast_PDB 62.1338% -40 - C1 -2XNP 9.3 NEK2_HUMAN
9 PsiBlast_PDB 61.6638% -46 - C1 -2XK8 6.9 NEK2_HUMAN
7 PsiBlast_PDB 61.0838% -44 - C1 -2XK6 6.6 NEK2_HUMAN
10 PsiBlast_PDB 60.8638% -44 - C1 -2XKC 6.6 NEK2_HUMAN
5 PsiBlast_PDB 60.3038% -36 - C1 -2XK3 6.1 NEK2_HUMAN
4 PsiBlast_PDB 59.1338% -43 - C1 -2WQO 7.3 NEK2_HUMAN