@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_24_1800: (2018-07-13 )
MGCSTSTHASPEADEDAPLKRSVYSASRTSDQVVSGRQNSNKDQTNDACTAVSENPSRTRSSSDTEGRAHGRGIGAIHYPNQLGKDECDGGEDEVVVIPPSADKSTRTRFTFPQRTLLNVGSHTQAGDSGERKRNSITASPSSFTAMQRRLSDGSHGHSSFTTMSPAPPDAKETPLQLTQTRALPTAATIPTACLSISPPQRLSIPANSFAGSSASASGAVALPSQEQHQIETPHVNDGGFSIEWDEEDNTPRGRGIPDSTTTESGPCSVTRGMMAPSGSFGIGVGGGWRSKSPKWIDLSRKRSQSTVSLLSLADTPNNPHVLSSGSDFGRDILGGSHVFGGLATGGGSSRPQSGYAMGRDMCVERFDQQRHSNGLAVFCNQPRECALCRNATAAFACEVCDDFFLCENCRFDLEAVCAVHDPTHAILYMQDNHYNSSRTFGGDSIFSLSGDGGVSSLFYNPCFKCKRVIDDVEPVYRCDQCDYIVCQECFIQHEEPGNAMERASSLSAAMAATREEQASCKPLPIESAALVLASGPMPPHEHELKRFQRKSRSNSVHEGAVVTKTRNSGGNKVINDYVVVRQIGHGSYAKVKLVQHVHTQELFALKILRRQKKAAMSGITLGRSRVKSAMAGISEDDLLREIAVMKFIGHPNVVKLKEVIEDVDSQKVYIIMEYCEKGPVHVLGDPALPLEQVRQYGADILRGLLHLHSEFLYHRDIKPANCLVNRDSVVKIADFGTCNSQIRTKLAEGTPAFSCPEQVRGEEVSGEVVDSWAFALTVYEMACGTLPVSTTSFVQHRSLLMSKSPVPIPKIGDEPLCDLLAQMLEKDLSKRLLLPAATRHPFFAECHVDVHGAVPGTAPRSIFAVLATSGGSAAAQPQQQQLPSLAELYDKALESVHRGKNLKDCFHGVRALRRVRRKEVETARHSGTGDQVGGGSAGAEKSSAYVMNSRDVYGGSDGSGSDGEDEEGAGRLWVGGRAGHKEEAAAAAAVEEAVEHHLFTQEPKLELAQVTLTAPATLEKLNRLHQVTAEMRLSHNALVRLAPLRLSTFSMLMDIAVTFNRLEAIPQEVLAAPRLVRLDLSHNRIDSIPGSLVTKALFLERLSLHHNLITSVGTTTITVVEPSPVTFRVPTSATATCMGSNMVAVPDASVVSSSITQTSLPGRGGSSRSKVVSVLAAPCLRHVRLSGNPLERLPDALETTHKLQLVLDAIPALMEQWDTHMQADSKPTTSTAAAATGGQSRLPAVIVWDDSFPVRIPSVEPAVWLAVNNVAIYRVQTLRLCQTRRVVLCQCADPRFPNGLFLSEELEVYFAALSKALQDCREQRQQLAVEAPFSLSAPAEAIPSEALPPIVGKAARNYVESYFFVTDDENEEEGGYHSLVSYLYDSLSANIPVLVVVVSSGTSCAVRTNIVAAISTCLTRLRGGDPEQLDAEQAELIVSTMRSLYA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_3(4GV1)
AKT1_HUMAN
[Raw transfer]




8R7_A_2(5UYJ)
KKCC2_HUMAN
[Raw transfer]




24R_A_3(5EAK)
MARK2_HUMAN
[Raw transfer]




8R4_A_2(5UY6)
KKCC2_HUMAN
[Raw transfer]




DXV_A_2(6BKU)
KKCC2_HUMAN
[Raw transfer]




609_A_2(2ZV2)
KKCC2_HUMAN
[Raw transfer]




6T2_A_2(6BQP)
KKCC2_HUMAN
[Raw transfer]




6Z5_A_3(5KZ8)
MARK2_HUMAN
[Raw transfer]




7LV_A_2(5TVT)
MELK_HUMAN
[Raw transfer]




34U_A_2(6BLE)
KKCC2_HUMAN
[Raw transfer]




BI9_A_2(6BQL)
KKCC2_HUMAN
[Raw transfer]




6Z2_A_3(5KZ7)
MARK2_HUMAN
[Raw transfer]




E5J_A_3(6BRC)
KKCC2_HUMAN
[Raw transfer]




R78_A_2(6BQQ)
KKCC2_HUMAN
[Raw transfer]




9JS_A_2(5VT1)
KKCC2_HUMAN
[Raw transfer]




EDO_A_5(5VCZ)
PMYT1_HUMAN
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




EDO_A_8(4DN5)
M3K14_HUMAN
[Raw transfer]




47 Fugue 79.5416% - - C1 -3QA8 - ? -
10 PsiBlast_PDB 76.1932% -44 - C1 -2ZV2 7.3 KKCC2_HUMAN
25 HHSearch 74.7028% -52 - C1 -5K00 - MELK_HUMAN -
24 HHSearch 74.4328% -51 - C1 -5TVT 8.5 MELK_HUMAN
2 PsiBlast_PDB 72.3033% -16 - C1 -5UYJ 7.9 KKCC2_HUMAN
4 PsiBlast_PDB 70.8433% -14 - C1 -6BKU 8.6 KKCC2_HUMAN
1 PsiBlast_PDB 70.3033% -12 - C1 -5UY6 8.6 KKCC2_HUMAN
5 PsiBlast_PDB 70.0533% -16 - C1 -6BLE 9.2 KKCC2_HUMAN
42 HHSearch 69.1726% -54 - C1 -3C0I - CSKP_HUMAN -
43 HHSearch 69.1426% -55 - C1 -3C0G - CSKP_HUMAN -
9 PsiBlast_PDB 69.0233% -11 - C1 -6BRC 6.5 KKCC2_HUMAN
6 PsiBlast_PDB 68.9633% -12 - C1 -6BQL 6.1 KKCC2_HUMAN
20 PsiBlast_PDB 68.2327% -3 - C1 -4YOM - ? -
8 PsiBlast_PDB 67.5733% -16 - C1 -6BQQ 5.6 KKCC2_HUMAN
7 PsiBlast_PDB 67.5533% -15 - C1 -6BQP 9.3 KKCC2_HUMAN
3 PsiBlast_PDB 66.4533% -12 - C1 -5VT1 3.1 KKCC2_HUMAN
41 HHSearch 66.3126% -31 - C1 -5ORV - AURKA_HUMAN -
33 HHSearch 64.4725% -54 - C1 -1J1B - GSK3B_HUMAN -
26 HHSearch 63.6929% -14 * C1 *4GV1 Error AKT1_HUMAN
30 HHSearch 62.5024% -32 - C1 -2Y7J - PHKG2_HUMAN -
16 PsiBlast_PDB 59.0531% -39 - C1 -5KZ8 8.1 MARK2_HUMAN
14 PsiBlast_PDB 58.0731% -26 - C1 -5EAK 8.1 MARK2_HUMAN
15 PsiBlast_PDB 56.3431% -39 - C1 -5KZ7 8.0 MARK2_HUMAN