@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_26_0950: (2018-07-13 )
MGPDCTAGGNGGGAHRYPPHRDVRGDEEASPRCPSPHRMRLQKQQCFQSSPENQQQQHPRALSSSNPGSPLMYTVCPATPDRSMNPYDRASPLYRSHASPHSRLGDSASPSSAMTEAGMYESNSDLSAVCPTWFNRCAASSPSLSSVMASRHLPPLQAHSPDPQSRCPQPFNSIAAAVSYSSPLGVASNESPHMKTALTSFGEASWGGLTSPNSNRGGMMASAPQQQSLGNCRSNVGHVMLPEEVSHPSKLAQSGMLNSSPSHSGGAGPARVSGASPYQCALDGLASQQQEKQQQSTLERYAPGNVTTPVGASSSAAAGGASPGSVPTGDADADKIVPRQHGDNNSLALNSSLEERLPTTAASVPHRHTSPSSVSWPRDAFASSPFSRDAPPSSHLHPRAAISPARESTPVMPLKTSPKTTSTPLRVDDSAPGGVEADCFSEARGSRASPPRPHAFSQHQSPEKGFIDSQSTGTPHPQPQPIHPLAPTSSSPQALKSPAMFGVIDLSYSRTDASGSNATPPMPTGATSVGASAVVKTRTQVRTPSRAPAVISVRVPVPSLPSNNSTPATSVNHADPTAAAASLSSTSAAATAVAPLNGGSSCSELTAHSGTTILRMVHSAGQRDSSYSTLHTTLSHSRDATTATATTTATTTPGYSPRADSQTPVHTATIASQHGTLFTPLSPLLAESDDDAVEAEQQQQQRKAVQSQQHMKSVASTALMAARVRKTAVSSPTVSVDAVRKPERSSQALTLTADTVLPVAVQEDEARCSSSAATTATRSSSNSRAQLSSSASLSRSINATTLTEPKGGTAGVAASGTGRLERVRTVVRAGSVSARNVASRERGPREKFAATFAASSSFSSKVAAAASSASASSMDMGAVAGARGAHVRRQTSVSTASTSSVASDMLRAPPALASYSFVSSRAQMQRYIDQWRDRFEEDKNAYKEGGYLTVTPGRIVHSRYVLIQKLGWGEFSTVWLGYDTKHATLGRGLSQAFVAVKVAKCRSNVQEATRYEVSLLRYLEARLPRHAAITNIIDCFDVRGEFGMHTCMVLPLCGPNLLSIIERMKADRSRRNAEDLRMIKEIVLSVLISLHELSELNVVHTDIKPENVLCSAVDSKLVNSMEKFCIYNQERSHMISVEDFKKSMAQQSTEQLVYLADFGLSALLEPPGSAQLWMSACSNVDASLLAPLMRCKKNFPVTRSGVVDNHRGTLIQTREYRAPEVLLGLDFTCTTDVWSVGCMTFELITGCFLMDPKRKTREPRDMDIEHLAMMMQILGPLPSEITSIRVRNNDYYDAIIQGTPVPKSGFRPPPEYLHRFVDRNGKFIYASRYHSYPRRNLEMELEPYLGFREAQLAANFILSCLHSYDPKKRPSAKKLLSHQWLYGVGAASKEKTPSR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NR9_A_4(3NR9)
CLK2_HUMAN
[Raw transfer]




RXZ_A_25(5MY8)
?
[Raw transfer]




3RA_A_3(3RAW)
CLK3_HUMAN
[Raw transfer]




ANP_B_8(1Q99)
SKY1_YEAST
[Raw transfer]




RXZ_A_25(5MY8)
?
[Raw transfer]




PVB_A_2(2X7G)
SRPK2_HUMAN
[Raw transfer]




3UL_A_2(4WUA)
?
[Raw transfer]




GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]




ADE_B_13(1Q8Y)
?
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




EDO_A_5(5MY8)
?
[Raw transfer]




EDO_A_17(5MY8)
?
[Raw transfer]




3 PsiBlast_PDB 90.0229% 0 - C- -3BEG - -
5 PsiBlast_PDB 75.1228% -48 - C1 -2X7G 6.8 SRPK2_HUMAN
4 PsiBlast_PDB 73.8229% -12 - C1 -5MY8 9.2 ?
21 HHSearch 73.8131% -27 - C1 -5MY8 8.5 ?
12 PsiBlast_PDB 73.4526% -41 - C1 -3NR9 6.5 CLK2_HUMAN
6 PsiBlast_PDB 72.1528% -46 - C1 -5MYV - SRPK2_HUMAN -
1 PsiBlast_PDB 71.0129% -11 - C1 -1WAK - SRPK1_HUMAN -
2 PsiBlast_PDB 70.1829% -7 - C1 -4WUA 6.7 ?
9 PsiBlast_PDB 67.0028% -57 - C1 -2WU6 - CLK3_HUMAN -
7 PsiBlast_PDB 66.9428% -51 - C1 -2EU9 - -
11 PsiBlast_PDB 65.6028% -55 - C1 -3RAW 4.7 CLK3_HUMAN
10 PsiBlast_PDB 64.3528% -51 - C1 -2WU7 - CLK3_HUMAN -
35 HHSearch 61.7728%-120 - C1 -3LLT - ? -
13 PsiBlast_PDB 60.1724% -24 - C1 -3LLT - ? -
30 HHSearch 56.1124% -44 - C1 -5BYZ 1.8 MK07_HUMAN
48 Fugue 55.8221%-119 - C1 -1BYG - CSK_HUMAN -
33 HHSearch 55.6839% -18 - C1 -1Q99 5.5 SKY1_YEAST
36 HHSearch 54.7439% -12 - C1 -1Q8Y 4.0 ?
22 HHSearch 53.6930% -87 - C1 -4AZF - DYRK2_HUMAN -
26 HHSearch 53.6330% -88 - C1 -5LXC - DYRK2_HUMAN -