@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_27_2420: (2018-07-13 )
MGRSMGLTAEAIAPSEGHFRHHYSLGDEIGKGAYAVVFRCNHRETKAVYAVKIVDKRKAGPKDIDDITHEIDVMGRIGYHPNVVQMIEYFSTERRFYIILDLLSGGMLFDRIIELKHYSESNASVLVRNVLSGLAHIHSRGVIHRDLKPENLLLRYAASPSTSPNSNLTDVCLADFGLAGYVPSTTCCGSPSYIAPEVISVGYYRTRKEPYDAKCDIWSIGVITYILLSGKMPFHGNSFKETFELIVSNRWSFNSDTWASVTPTAKDFIQACLTYDPVERPTALELLQHPWLANEQPHVHLGRSLESLRDLTKKKVKAAVQVFCWTQSLLGPLDWTPPFMRFLRHTDKFSTVLTHQSQTDPKQVHTVDFSKALDHKKPGWRIQDCCTCPSEQVCRHIQNVHEYLFVGKRSMEVYPFIDELRMMHEEAEDSLTADPRDAEARKRLDQVNYLIEAACVFSDELAKVPAGELKPNLMLDGSRNTLFRALGGSRSVTKTWHGSDKEDVAHRVVEKMRAQKLASPATGKTTKAAAMPPSSTPTPKPSSKPSSSKRITTTPNAGTPSRRS

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GVD_A_7(2VN9)
KCC2D_HUMAN
[Raw transfer]




GVD_B_8(2VN9)
KCC2D_HUMAN
[Raw transfer]




K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]




ADP_A_3(5FG8)
KCC2A_DROME
[Raw transfer]




K88_A_3(2WEL)
KCC2D_HUMAN
[Raw transfer]




9EJ_A_3(5VLO)
KCC2D_HUMAN
[Raw transfer]




AN2_A_3(5H9B)
KCC2A_DROME
[Raw transfer]




GOL_A_12(3IGO)
?
[Raw transfer]




C2V_A_3(6AYW)
KCC2D_HUMAN
[Raw transfer]




D0S_B_7(6BAB)
KCC2D_MOUSE
[Raw transfer]




DKI_A_2(2W4O)
KCC4_HUMAN
[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




B49_D_8(2Y7J)
PHKG2_HUMAN
[Raw transfer]




D0S_A_5(6BAB)
KCC2D_MOUSE
[Raw transfer]




3AM_A_2(3C0I)
CSKP_HUMAN
[Raw transfer]




DRN_A_2(2V7O)
KCC2G_HUMAN
[Raw transfer]




1PE_A_2(4B4L)
DAPK1_HUMAN
[Raw transfer]




EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]




EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]




3 PsiBlast_PDB 86.3434%-120 - C1 -3NCG - ? -
27 HHSearch 85.9837% -82 - C1 -2BDW - KCC2D_CAEEL -
1 PsiBlast_PDB 84.2634%-117 - C1 -3IGO 2.3 ?
6 PsiBlast_PDB 84.2234% -82 - C1 -2BDW - KCC2D_CAEEL -
36 HHSearch 82.7738% -76 - C1 -2VN9 5.3 KCC2D_HUMAN
16 PsiBlast_PDB 81.8336% -79 - C1 -2VZ6 - KCC2A_HUMAN -
17 PsiBlast_PDB 81.6636% -75 - C1 -2V7O 4.3 KCC2G_HUMAN
21 HHSearch 81.6238% -97 - C1 -2WEL 4.7 KCC2D_HUMAN
18 PsiBlast_PDB 81.2836% -73 - C1 -5U6Y - KCC2A_RAT -
12 PsiBlast_PDB 80.8736% -72 - C1 -2VN9 5.1 KCC2D_HUMAN
4 PsiBlast_PDB 80.6134% -74 - C1 -4Y5Q - ? -
11 PsiBlast_PDB 79.8036% -92 - C1 -2WEL 4.7 KCC2D_HUMAN
2 PsiBlast_PDB 79.2334% -79 - C1 -3MWU - ? -
9 PsiBlast_PDB 79.1230% -86 - C1 -3LIJ - ? -
14 PsiBlast_PDB 79.0338% -95 - C1 -6AYW 5.4 KCC2D_HUMAN
19 PsiBlast_PDB 79.0036% -90 - C1 -5FG8 4.5 KCC2A_DROME
20 PsiBlast_PDB 78.9236% -85 - C1 -5H9B 5.8 KCC2A_DROME
34 HHSearch 77.8539% -81 - C1 -5IG1 - ? -
22 HHSearch 77.8526% -38 - C1 -3Q5I - ? -
35 HHSearch 77.4139% -75 - C1 -5IG1 - ? -
13 PsiBlast_PDB 77.2538% -94 - C1 -5VLO 6.0 KCC2D_HUMAN
31 HHSearch 77.1838% -75 - C1 -6BAB 5.0 KCC2D_MOUSE
15 PsiBlast_PDB 76.7338% -89 - C1 -6BAB 5.1 KCC2D_MOUSE
10 PsiBlast_PDB 74.8936%-102 - C1 -2W4O 4.7 KCC4_HUMAN
30 HHSearch 73.8336% -39 - C1 -3C0I 3.8 CSKP_HUMAN
37 HHSearch 65.6434% 1 * C1 *4B4L 2.0 DAPK1_HUMAN
40 HHSearch 63.9231% -36 - C1 -2Y7J 6.0 PHKG2_HUMAN
39 HHSearch 61.5431% -32 - C1 -2Y7J 5.5 PHKG2_HUMAN