@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_28_0620: (2018-07-13 )
MDNYDVLEVIGEGTYGVVFKCCDKRTNRIVAVKQFKNFQANAYVRVAMLRELRVEQLLKGEPNVTQLLETFKQKNRLYLVMEYIPRSLLDVLEEVQHGLPEDSLVVLLFTILLGIRSCHRNGIIHRDVKPENILVRDDGTASLCDFGFCRPLPRQLQPQAQQLSISSQDIGPSASPIAESGSFGLRSLPPPNDTPQMCNGASVSSANSAMLSELVLADHQAIMTNYVATRWYRSPEMLLGMPSYTYAVDMWAVGAIMAEAIDGEPLLPGKTELEQLSLIQTRIGDFPAAYEAAVRKRNGGTLRLHSLNPLAAPPQQLRTKSMQQKSRRASDARDAAQKRTESKQGTRSYLTERYGGRIAKAGLNLLHRLLRIDAAERITVEEALGHPYFDSVRGRFDAAPNGARGARNSNGACDEAAEMQPTTAETAGPTPMPLTTTASRQAPLPPLTATGAADCISPLLSMSDAAGGGGSTCLAAAAPPLVEVPFSLVDRVGAGADDDGGGPLQMPCCAERSPRVTTVAWEALSSSPGSRAPCAVASGNSSTTNSSSLSLWTASDTSAEVAPPTDVTVAKDHVSFPRFSSVLVPLHPELPKPTETGCRHASAAACNGAAEGGNSPPPLAPEESNNGGQPVLRRQAASEGANTRATQRDASMHSDDCSSTSLLQSRQSHHSPRDARQLRHRKSSLESGGNVAALRGSDSSPMNTAAQEPSGAGGAVPTTAVSGMDDPASPSVLQSRRTAQRRSGGVVDSRLSSSKISAANACRTTSPSSLPAKTYSFKSIPTSRSKALAPNVVQSTSKYDLMQSAPEDHTEKRRHPSGPVSAPRCQGSGRGVEKGAAANSKGAHTCSSSSSMMSNALRSARGDPGRTGGLGSATKERRSSVGRRIDGHGLHVVPAAPSCVNATTPASSCRATAQEPAEVSLLRRRSTAKSRPPPQPGRRTSTPTARGGIANGNHHSPTLPRPLFARSSPEAPALLSVSDARVGGGKKRGLSRFVSPHLPREVRPLPAPERFTLLQEIESLEFVVGPPSAVEVLAPVVAALVSHTPEHAESDTDAGGGTRDRNEGDTRASTIACAEHVVPASQPPEMLDNDVQPNGDRGGGNSSSSLTLGETRRRCSGTASSRAWAAKRDTAASGKTSALVEATANSKLEDNGRQQSLQRPPHPCGGTGGRPLRMDSNSHSGNTSTHNANATTVGSSRAAPSLIFRSSRTASSPLKLATIHPFSFALQGEGELRELSTNGCHASTSASTGMSFTTPNSVASPPTRRLAPALLRHHHPATAVGACLVQASTSLGPDPVFGSSAFSAHSPLVAKDSAWSPTLSPKPQKRSETDARRASMESPIVSLSGTRQQRCLSDIPIELSLSEELFADSAACGPRVRHRRHENATPLSTTPPLTMPDDLETVVLMGTPPAPRRTNQQRQDEVPCTATWSPTRSGATAMMSTSMPGNSAPFRGLDRDSDGSSAPFEGKGSAAKTEAVDITARTRRHSVAPALFAAAPKGVPALNEDDLTNVCETSSLPMRGSLEARGAGNGASTSSRKIPGPALAPPQPLLGGASVLSAQQLHAGGGRRKSRLVL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_D_4(1J1B)
GSK3B_HUMAN
[Raw transfer]




ANP_A_3(4H3Q)
MK01_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




DMS_A_5(4XP3)
MK01_RAT
[Raw transfer]




EDO_A_5(5VCZ)
PMYT1_HUMAN
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




EDO_A_7(4QTB)
MK03_HUMAN
[Raw transfer]




28 HHSearch 90.0740%-134 - C1 -4BGQ 7.7 CDKL5_HUMAN
2 PsiBlast_PDB 80.4230%-126 - C1 -4AGU 8.2 CDKL1_HUMAN
35 HHSearch 78.8932%-118 - C1 -1V0B - CDC2H_PLAFK -
24 HHSearch 74.9132% -34 - C1 -5BYZ 1.8 MK07_HUMAN
3 PsiBlast_PDB 74.9029%-109 - C1 -3ZDU 7.5 CDKL3_HUMAN
27 HHSearch 72.7831%-120 - C1 -1UA2 - CDK7_HUMAN -
4 PsiBlast_PDB 70.5728% -92 - C1 -4AAA - CDKL2_HUMAN -
30 HHSearch 70.3632% -60 - C1 -1UNL 6.9 CDK5_HUMAN
1 PsiBlast_PDB 70.0231% -61 - C1 -4BGQ 6.0 CDKL5_HUMAN
5 PsiBlast_PDB 69.3028% -89 - C1 -4BBM - CDKL2_HUMAN -
54 Fugue 68.7216% - - C1 -3QA8 - ? -
41 HHSearch 68.6231% -78 - C- -3GBZ - ? -
42 HHSearch 67.7534% -9 * C1 *5LQF - CDK1_HUMAN -
23 HHSearch 67.1728%-124 - C1 -5VCZ 3.1 PMYT1_HUMAN
43 HHSearch 66.5928% -6 - C1 -4AZF - DYRK2_HUMAN -
34 HHSearch 66.2631% -86 - C1 -4AU8 4.7 CDK5_HUMAN
40 HHSearch 66.2531% -58 - C1 -3GC0 - ? -
22 HHSearch 66.1128%-122 - C1 -5VCY 3.5 PMYT1_HUMAN
10 PsiBlast_PDB 65.7026% -25 - C1 -2B9F - FUS3_YEAST -
33 HHSearch 63.8329% 11 - C1 -3OZ6 - ? -