@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_29_2140: (2018-07-13 )
MAQAAYPPSREGSYPHSRSGGPRANPMLPEQMIGSYVIRETIGRGSFGKVKKGRHVHTGEYVAIKILNRQKLKSANMDKKIHREIEILQLFSHPNICRLYEVISTPTDMYLIMEYVEGGELYDYIVQKGRVRESEARYIFQQIVCAIEYCHHFRVVHRDLKPENILLGTGLQVKLIDFGLSNITKDGEFLATSCGSPNYAAPEVISGKLYFGPEVDVWSCGVILYALLCGCLPFDEDSIPLLFSKIKKGKYAIPSNMQTGPRELIQQILVVDPLVRLTVPQIRDNAWFNQRLPMRLSYSESIFSVKEDRILSVLVSETAKRLGVRDRDVRKELELGYGAAFVAYNILLDARRRREIAAEVRELGMSGDESRGVSHVIGAQQTKFQPKATERELNMGLMLTQSPAMVVLLDEEDATRNKWAYNRGCFVPASVATLGDPTKVSDTSLSDGSGNGGPGGSIAVGSFRITSKMCSGSLVGSGSVGSSSYAPGSLRGAAGLTGGSSSYRRAGMQSSTGGTAASQLGANLSDQPRVGSVARKHAMYTAEEEQFIVENNYGWRIGIMTDWRAEQALSAIYDVLRTFKMQWKVVSPFRLLARSTAETWSVMADSTQSRNASTRRNTLSTYSVESSAPIRIGCRSGAPGSGSSDDHEDGDIAGSMQRDEECIHAHITRTRRAGAAARSFGSAPGGGFNTSSSQVARGNYFGGLQGGDEEAAIVSGSAASGVLQSAHAIESGSESTSSPRDPRGASPPASAAASTSAIAEPASSPANPVVISLYFFRIHERHDKGYLVDFKVVRNAMVAADLVLLLSDTLVRKLG

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PV_A_2(5K00)
MELK_HUMAN
[Raw transfer]




6Z5_A_3(5KZ8)
MARK2_HUMAN
[Raw transfer]




ADP_A_2(5ORV)
AURKA_HUMAN
[Raw transfer]




24R_A_3(5EAK)
MARK2_HUMAN
[Raw transfer]




6Z2_A_3(5KZ7)
MARK2_HUMAN
[Raw transfer]




7LV_A_2(5TVT)
MELK_HUMAN
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




STU_A_4(4RER)
AAPK1_HUMAN
[Raw transfer]




16X_A_3(2X4F)
MYLK4_HUMAN
[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




EDO_A_3(4JXF)
PLK4_HUMAN
[Raw transfer]




2 PsiBlast_PDB 92.9752%-139 - C1 -5EZV - AAPK1_HUMAN (first) -
1 PsiBlast_PDB 92.3053%-137 - C1 -5ISO - ? -
29 HHSearch 83.4450%-141 - C1 -4RED - AAPK1_HUMAN -
5 PsiBlast_PDB 82.9560%-141 - C1 -3AQV 5.2 AAPK2_HUMAN
4 PsiBlast_PDB 82.9360%-150 - C1 -2YZA - AAPK2_HUMAN -
32 HHSearch 82.6360%-140 - C1 -3AQV 5.2 AAPK2_HUMAN
27 HHSearch 77.5342%-116 - C1 -2QNJ - MARK3_HUMAN -
24 HHSearch 76.9939%-138 - C1 -5TVT 9.2 MELK_HUMAN
30 HHSearch 76.5150%-134 - C1 -4RED - AAPK1_HUMAN -
6 PsiBlast_PDB 76.1648%-127 - C1 -4RER 7.4 AAPK1_HUMAN
9 PsiBlast_PDB 76.1255%-152 - C1 -3DAE - SNF1_YEAST -
23 HHSearch 74.4039%-132 - C1 -5K00 12.1 MELK_HUMAN
26 HHSearch 73.9942%-113 - C- -3FE3 - MARK3_HUMAN -
10 PsiBlast_PDB 73.0055%-157 - C1 -3HYH - SNF1_YEAST -
7 PsiBlast_PDB 72.3249%-131 - C1 -4RED - AAPK1_HUMAN -
41 HHSearch 71.6254%-158 - C1 -3HYH - SNF1_YEAST -
11 PsiBlast_PDB 71.1950%-129 - C1 -2QNJ - MARK3_HUMAN -
14 PsiBlast_PDB 68.4649%-142 - C1 -5KZ8 8.1 MARK2_HUMAN
18 PsiBlast_PDB 67.6848%-151 - C1 -1ZMV - MARK2_RAT -
17 PsiBlast_PDB 66.4349%-124 - C- -3FE3 - MARK3_HUMAN -
13 PsiBlast_PDB 65.9949%-150 - C1 -5KZ7 8.3 MARK2_HUMAN
43 HHSearch 64.9831%-122 - C1 -5ORV 6.3 AURKA_HUMAN
15 PsiBlast_PDB 64.4749%-129 - C1 -5EAK 7.6 MARK2_HUMAN
37 HHSearch 56.5932% -51 - C1 -4GV1 6.4 AKT1_HUMAN
38 HHSearch 51.4432% -94 - C1 -4JXF 3.3 PLK4_HUMAN
36 HHSearch 47.4335% -22 - C1 -2Y7J 6.9 PHKG2_HUMAN
42 HHSearch 45.0331% -59 - C1 -2X4F 6.0 MYLK4_HUMAN