@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_30_2930: (2018-07-13 )
MASNAAANGSFGSSANAVQLVSTQRGRKVYCVRGQSFDIDDNYTVTSVIGHGAYGVVCAALDDRTFQEVAIKRVSRVFEDLIDGRRIWREILLLRILKECGCRNVLRLIRVLPPRDPIMEFRDLYLVTDLYDIDLFSIIRQNKCESIDLLRRISVRVLRCLADMHSMGIVHRDIKPSNILLRDEKNAEEAIVCDFGLARAGLHRLSEPLDLTDYVVTRWYRPPELLLMCPYSYPIDIWAVGCVMAEYAMQRPLFAGRDYIHQLQFVLSSIPITGVDFIERSSSSSGLANMNEIAKKYKGTRPLPQLLSKLPKDGLELVTEMLAFEPNKRITAQEALKHPFFSSVGGPDCKSYPAPPELDLGFDMHAEVSECQLRRAIWDELQYYRK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YIX_A_2(2YIX)
MK14_HUMAN
[Raw transfer]




ANP_A_5(4IC7)
MK07_HUMAN
[Raw transfer]




AQY_A_2(5WJJ)
MK14_HUMAN
[Raw transfer]




GK6_A_2(3D83)
MK14_HUMAN
[Raw transfer]




T75_A_2(6ANL)
MK14_HUMAN
[Raw transfer]




P5K_A_3(3P5K)
MK14_MOUSE
[Raw transfer]




P7B_A_2(3P7B)
MK14_MOUSE
[Raw transfer]




4WE_A_2(5BYZ)
MK07_HUMAN
[Raw transfer]




G11_A_2(3IPH)
MK14_HUMAN
[Raw transfer]




4WE_A_2(5BYZ)
MK07_HUMAN
[Raw transfer]




R4L_A_2(4B99)
MK07_HUMAN
[Raw transfer]




GOL_A_6(4ZSG)
MK07_HUMAN
[Raw transfer]




P79_A_3(3P79)
MK14_MOUSE
[Raw transfer]




P7A_A_3(3P7A)
MK14_MOUSE
[Raw transfer]




P78_A_3(3P78)
MK14_MOUSE
[Raw transfer]




GOL_B_7(3N9X)
?
[Raw transfer]




4WG_A_2(5BYY)
MK07_HUMAN
[Raw transfer]




CQ8_A_3(4ZZN)
MK01_HUMAN
[Raw transfer]




TT4_A_2(4XNE)
MK01_RAT
[Raw transfer]




P7C_A_3(3P7C)
MK14_MOUSE
[Raw transfer]




4R0_A_6(4ZSJ)
MK07_HUMAN
[Raw transfer]




BOG_X_3(2FST)
MK14_HUMAN
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




21 HHSearch 96.6835% -62 - C1 -5BYZ 8.0 MK07_HUMAN
4 PsiBlast_PDB 93.8636% -82 - C1 -4ZSG 2.3 MK07_HUMAN
7 PsiBlast_PDB 93.8536% -72 - C1 -5BYY 7.3 MK07_HUMAN
1 PsiBlast_PDB 93.7834% -33 - C1 -4O2Z - ? -
5 PsiBlast_PDB 93.6035% -84 - C1 -4IC7 5.7 MK07_HUMAN
3 PsiBlast_PDB 93.5236% -76 - C1 -5BYZ 8.1 MK07_HUMAN
9 PsiBlast_PDB 92.0336% -80 - C1 -4ZSJ 4.9 MK07_HUMAN
2 PsiBlast_PDB 91.0136% -90 - C1 -4B99 8.1 MK07_HUMAN
24 HHSearch 90.4636% -82 - C1 -3N9X 2.5 ?
23 HHSearch 89.5535% -96 - C1 -5CI6 - MPK6_ARATH -
29 HHSearch 89.5033% -42 - C1 -4O2Z - ? -
26 HHSearch 89.4934% -80 - C1 -3COI - MK13_HUMAN -
33 HHSearch 88.9233% -81 - C1 -4XNE 4.3 MK01_RAT
28 HHSearch 88.4434% -82 - C1 -4YNO - MK13_HUMAN -
39 HHSearch 87.5335% -96 - C1 -2YIX 8.6 MK14_HUMAN
25 HHSearch 86.4333% -83 - C1 -4ZZN 6.0 MK01_HUMAN
8 PsiBlast_PDB 85.2036% -8 - C1 -5CI6 - MPK6_ARATH -
11 PsiBlast_PDB 83.5337% -95 - C1 -6ANL 10.8 MK14_HUMAN
13 PsiBlast_PDB 82.9837% -94 - C1 -3IPH 5.8 MK14_HUMAN
10 PsiBlast_PDB 82.8837%-100 - C1 -5WJJ 11.5 MK14_HUMAN
12 PsiBlast_PDB 82.3737% -91 - C1 -3D83 8.6 MK14_HUMAN
34 HHSearch 81.2335% -97 - C1 -2FST 3.6 MK14_HUMAN
16 PsiBlast_PDB 77.4937% -65 - C1 -3P79 8.8 MK14_MOUSE
15 PsiBlast_PDB 77.4137% -65 - C1 -3P78 8.8 MK14_MOUSE
17 PsiBlast_PDB 76.1737% -59 - C1 -3P7A 8.2 MK14_MOUSE
20 PsiBlast_PDB 76.0337% -63 * C1 *3P5K 8.9 MK14_MOUSE
18 PsiBlast_PDB 75.9637% -60 - C1 -3P7B 9.3 MK14_MOUSE
19 PsiBlast_PDB 75.1337% -62 - C1 -3P7C 8.6 MK14_MOUSE