@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_32_0270: (2018-07-13 )
MDKYQRVKVLGKGSFGSAILIKRKTDGLLFVVKEVGMTRMSKKERDEARHECTVLQQLQHPNIVRYVEQFENNNNLYIVMEYCDGGDLAEKVKHSRGPMKESSMLYYFSQICLAIEYLHARHILHRDIKTMNVFLMKNGAVKLGDFGISTVLRTTMGMANTVCGTPYYFSPELCRNRPYNNKSDIWALGVLLYECATGGRHPFDGTSMNQLMQRIVQGHYAPLSSQYSSDFRKMVDWCLQKDPAKRPSIKQTLALPLMRRSLEQLEENLMLATQCRVRLKDIIDFEGGMDQEERKGSSPQPSPKLSPRAVAKDGVSPGQAAALAMARQNLSPVFQPPTTPSHSPMASPERGGGAPAAVGPKPSAAVPQSPTASPKQGNEAHRFYSPCQKRPIANPLLPGGGARPAPAESPSGAVPPPLAQRPLEEPHHTPPLRIKVTLGGAGDRRGLAAAALPAAAAAPAPGPSPNAADAFHADMRRVDAIIARYGRNSDEKAKETIHAYMRRKHEAYLKRQKEEIEARERRNRMRKEELRRVLENQRMAVSPLRNNDPRNSPHLNNINMNGYPDDRSPRRGSPQPRAKPENVHLPSRSPPSSPLQDKEPVSARTPTNAEPAVFGRDPRRGAPPGEPASRPTTPQQQRVLQQPPSPAAAAPNGNPLPQTPPRRVLYAANSPQQAHPPSQNRTEAPEARRAVTPDPLHSPPSRLGAPRGAAFDIDRRSLPNSKPEAASGGQKAPLTAGLGGGIDGHRMVLQTSQQHLPQPRRPMDAEQLPARRDRRESRVLEDAAVGRRPSALSPISGDPHDHCSPSQAAAAAPERASLSAGDPRLQRPGRALQRYLKPLGGRGEDGVSPLPSPTSAQSPRRGAAGVDRGHRGSSGVPPPVKSKALVSAGNANPPSSAPGELADIPRTAAHSTRAQASPCTPVKEALRALRRSKVQAGAPAPPPSSAMAAGMKDLPAIITSPEHERGARRNHPRYRLEEAALYRGMRREQPSREDERVLVDEHRKPHHAEVSAVPNTLEALRSLRAQQDKAMRAEGGAREEVNPGGQLALLKQRQRMQQRPRQGSTSSSASVPLAPRLMTRATEAAASPRSEVPSGYDRKTPVPRDNAAARPSAAHVTALSLGDVNRGAAPSRAAPPSAHAGAPPSPKPSTGGGAGVQSSMEGYAEMLQHLKDLLQRRRVSSAGGASAPTSPTTAASALSAIENPRDPGARSPISMRNRALPPPLNPSPLGGVDMSCASDSGDSGVLVSPPHLKATRPLHPQPNAVPVVNVRPGCDAEEEDDDDFEDAVPLSPVRCTELNDAYARQQDQQEQKWRHAQEDVYTSDVDLTSAAMEEELEGEEGYTDYHKRPSSKELPKGIKS

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




CK7_B_6(4B9D)
NEK1_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




NU6_A_2(5M51)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




CK7_A_3(4B9D)
NEK1_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




3AM_B_4(3C0G)
CSKP_HUMAN
[Raw transfer]




3AM_A_2(3C0I)
CSKP_HUMAN
[Raw transfer]




34 HHSearch 82.7249% -54 - C1 -4B9D 5.7 NEK1_HUMAN
39 HHSearch 81.7149% -53 - C1 -4APC - NEK1_HUMAN -
1 PsiBlast_PDB 79.7647% -47 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 79.2047% -48 - C1 -4B9D 5.0 NEK1_HUMAN
49 Fugue 67.8626% 19 - C1 -4AW2 - MRCKA_RAT -
5 PsiBlast_PDB 67.1339% -29 - C1 -2W5A 5.5 NEK2_HUMAN
20 PsiBlast_PDB 67.0739% -21 - C1 -5M51 7.0 NEK2_HUMAN
29 HHSearch 65.8324% -75 - C1 -1UNL - CDK5_HUMAN -
36 HHSearch 65.0831% -43 - C1 -3C0G 4.6 CSKP_HUMAN
33 HHSearch 64.3231% -36 - C1 -3C0I 4.3 CSKP_HUMAN
16 PsiBlast_PDB 63.6539% -29 - C1 -2XNM 7.4 NEK2_HUMAN
13 PsiBlast_PDB 61.9039% -27 - C1 -2XKD 6.7 NEK2_HUMAN
18 PsiBlast_PDB 61.4739% -14 - C1 -2XNO 6.4 NEK2_HUMAN
17 PsiBlast_PDB 61.2139% -20 - C1 -2XNN 6.4 NEK2_HUMAN
26 HHSearch 61.1729% -20 - C1 -4GV1 - AKT1_HUMAN -
14 PsiBlast_PDB 60.9339% -15 - C1 -2XKF 6.3 NEK2_HUMAN
35 HHSearch 60.8927% -82 - C1 -4XBR - INKA1_HUMAN (first) -
32 HHSearch 60.7728% -69 - C1 -5J5T - M4K3_HUMAN -
19 PsiBlast_PDB 60.7039% -19 - C1 -2XNP 9.0 NEK2_HUMAN
8 PsiBlast_PDB 60.6639% -20 - C1 -2XK4 7.1 NEK2_HUMAN
15 PsiBlast_PDB 59.3739% -17 - C1 -2XKE 6.3 NEK2_HUMAN
11 PsiBlast_PDB 57.7739% -16 - C1 -2XK8 7.0 NEK2_HUMAN
10 PsiBlast_PDB 57.1239% -13 - C1 -2XK7 6.3 NEK2_HUMAN
12 PsiBlast_PDB 56.8939% -10 - C1 -2XKC 6.7 NEK2_HUMAN
7 PsiBlast_PDB 56.8739% -4 - C1 -2XK3 6.0 NEK2_HUMAN
6 PsiBlast_PDB 55.1839% -5 - C1 -2WQO 7.3 NEK2_HUMAN
9 PsiBlast_PDB 54.5339% -7 - C1 -2XK6 6.5 NEK2_HUMAN