@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_32_3450: (2018-07-13 )
MEAYEILGILGEGTYGVVVKARSRVTGKLVAIKRFKQTEQDEHVRKTSSREVRMLQLLQHPNVIRLEDVFRREGKLYLVFEFIDQTILQLLESTTRGLHRRELRRYTYQLLRGIEFCHNHNVIHRDVKPENVLIDESGLLKLCDFGFARQTSAKGKYTDYVATRWYRAPELLVGDVAYGKPVDVWALGCMFAELSDGQPLFPGESDLDQLCLIMQTCGPVPQRLVFIFMHNPLYNGISFPHTDILYTLKERYHRESNDWLEFLSSCLHTDPAQRLTCTELMELPYFTRDGFRDRYEAELRAATGLPQLRSTPTTSAPSTQRRAPDQAVALGGDLKADTVVSPHERRSSEIISPKLQGEQPPTVKNSSSDTHISKTALKPAAHDANAGKGKGAGAPTFTLTSPHKAASEHPVQLPMILNSNSERAVAAALTDYLNQMPASSSAVVSTPLQATPAEVAGGFTNADLLSRSCGAVPPPQTSQITNPSTTRDKNRKRNVGLAETELHRPSSASISDDTEYAATIDSSKGEPAKHISDHPRASATLPPNGVLGSGGSHEPTREGEKTNASPPLPSHGVAESSMRVLLTTAAPGKDDGETAVLSHRPLKPASADKAAATAATAFSSPTLAATHGAPLAECLQGLPALSLHLPRHLQQERQTPAAEQPQSHTPLSAETSISSFHVCRRNPLAAASTENDDVSRGKANIEPAGSSVANPRRGLSNSSVSTAASETKKRKSARHKRDTSRLHDQAVGPVSGSASRRSVPGNASDVVAYRAGFASVVNSLKSTVSQSLSYILGQQQRQPLLSPDSRGVHAADPHLHGVGAGPSVPDSTHNRNADAAGPQLRKERRSKPLAASTHALQGSDQRHRQQSQPRLDGPLHPDGGASQRATATLMALSALRNVSLPPPTKSAGDADKSSYGHHTRSHTNNNGGETVSPVVGGDGNGTQTCIASRARRPIAVCAVHGNNRDSDELISTRRVQKKNAVATHGRTGNGAVGPISCTDSSTTSSYQATSIMYGAPYHPFTRASKMDGEVGGAPQRQTLRRPKKKIADSRGSGIANITSSIGPRHSLARARQIQHQPQLAKEDGGSGDGKTPQFNAAAAASPYTSS

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_H_8(1UA2)
CDK7_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_3(4BGQ)
CDKL5_HUMAN
[Raw transfer]




38R_A_2(3ZDU)
CDKL3_HUMAN
[Raw transfer]




404_A_2(3PJ8)
CDK2_HUMAN
[Raw transfer]




HDT_A_2(1OIT)
CDK2_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




D15_A_4(4AGU)
CDKL1_HUMAN
[Raw transfer]




107_E_5(1FVV)
CDK2_HUMAN
[Raw transfer]




TC0_A_3(4BBM)
CDKL2_HUMAN
[Raw transfer]




TC0_A_3(4BBM)
CDKL2_HUMAN
[Raw transfer]




ANP_D_4(1J1B)
GSK3B_HUMAN
[Raw transfer]




DTQ_B_2(1DI8)
CDK2_HUMAN
[Raw transfer]




U55_B_2(1JSV)
CDK2_HUMAN
[Raw transfer]




I17_B_2(1G5S)
CDK2_HUMAN
[Raw transfer]




RRC_A_5(1UNL)
CDK5_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




DKI_A_2(4AAA)
CDKL2_HUMAN
[Raw transfer]




106_A_2(1FVT)
CDK2_HUMAN
[Raw transfer]




PVB_A_2(1CKP)
CDK2_HUMAN
[Raw transfer]




Z3R_A_6(4AU8)
CDK5_HUMAN
[Raw transfer]




GOL_A_3(5BYZ)
MK07_HUMAN
[Raw transfer]




ATP_E_5(1FIN)
CDK2_HUMAN
[Raw transfer]




EDO_A_3(1CKP)
CDK2_HUMAN
[Raw transfer]




EDO_A_5(5VCZ)
PMYT1_HUMAN
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




1 PsiBlast_PDB 94.1148%-154 - C1 -4AAA 6.0 CDKL2_HUMAN
38 HHSearch 92.9549%-157 - C1 -4AAA 6.0 CDKL2_HUMAN
41 HHSearch 88.6849%-132 * C1 *4AGU 8.7 CDKL1_HUMAN
2 PsiBlast_PDB 88.2648% -92 - C1 -4BBM 5.9 CDKL2_HUMAN
36 HHSearch 87.3749% -98 - C1 -4BBM 5.9 CDKL2_HUMAN
4 PsiBlast_PDB 85.1646%-125 - C1 -4BGQ 8.4 CDKL5_HUMAN
5 PsiBlast_PDB 84.2045% -76 - C1 -3ZDU 8.6 CDKL3_HUMAN
3 PsiBlast_PDB 83.5250% -92 - C1 -4AGU 8.7 CDKL1_HUMAN
22 HHSearch 82.9145%-119 - C1 -4BGQ 8.4 CDKL5_HUMAN
13 PsiBlast_PDB 71.8241% -62 - C1 -1BUH - CDK2_HUMAN -
7 PsiBlast_PDB 70.7441% -60 - C1 -5UQ2 - CDK2_HUMAN -
40 HHSearch 70.6138% -84 - C1 -1V0B - CDC2H_PLAFK -
6 PsiBlast_PDB 70.3741% -63 - C1 -5UQ1 - CDK2_HUMAN -
17 PsiBlast_PDB 69.8541% -52 - C1 -1FVV 6.3 CDK2_HUMAN
10 PsiBlast_PDB 69.7341% -70 - C1 -3PJ8 6.0 CDK2_HUMAN
14 PsiBlast_PDB 69.2741% -76 - C1 -1DI8 6.8 CDK2_HUMAN
18 PsiBlast_PDB 68.8641% -61 - C1 -1JSV 4.5 CDK2_HUMAN
11 PsiBlast_PDB 68.8441% -54 - C1 -1FIN 3.6 CDK2_HUMAN
15 PsiBlast_PDB 67.9141% -50 - C1 -1F5Q - CDK2_HUMAN -
12 PsiBlast_PDB 67.7641% -81 - C1 -1CKP 5.5 CDK2_HUMAN
16 PsiBlast_PDB 67.2441% -73 - C1 -1FVT 5.8 CDK2_HUMAN
9 PsiBlast_PDB 66.5741% -78 - C1 -1OIT 5.8 CDK2_HUMAN
19 PsiBlast_PDB 65.4741% -75 - C1 -1G5S 8.6 CDK2_HUMAN
37 HHSearch 64.7137% -82 - C1 -4AU8 4.9 CDK5_HUMAN
30 HHSearch 64.0938% -76 - C1 -1UA2 5.7 CDK7_HUMAN
26 HHSearch 61.5536% -44 - C1 -1UNL 6.3 CDK5_HUMAN
25 HHSearch 61.4134% -21 - C1 -5BYZ 1.8 MK07_HUMAN
21 HHSearch 60.9434% -25 - C1 -1J1B 4.2 GSK3B_HUMAN
28 HHSearch 52.6230% -41 - C1 -5VCZ 3.1 PMYT1_HUMAN
29 HHSearch 51.7130% -41 - C1 -5VCY 2.3 PMYT1_HUMAN