@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_33_1810: (2018-07-13 )
MSKEAAKTPREDGGVARKGDGKAPKKLIGGHIELGHVLGVGGFGKVYNAYDVTKKVHVAVKMIDKALVRSSGIQSYVEREIEMMRKMKNQHVVRLLEAIETSKAYNLVMELAPNGELFDKIVDSKRFDEETARNYFQQLICAVHYCHRMNIVHRDLKAENLLLGENNVLKVCDFGLSRYTKEGRFNDHEVLFTSLAGSIDYQAPEVLKERGYEGDSCDMWSCGCVLFFMLCGYLPFTDRSDGLTRKRIMSCQYNKTSRYLPEQAADLIAHLLVPFPSARYTTSDVIQHPWFRVNLDPSMFPDDNVVPTPMSPLGNGEFIQRVITPQMSSGSFGAAPSPTTSKADEMHQAFQSCNITGDGFLNKEEVRDALIKLNGGNQVTEQEVKDFMSNFQVDQEGRITEEEFVMGWTKHQNDLGSKYDLSKMAHLFHYDLEKEFLQVVREAFDLIDSEHSGIITKEKLKSLNLGLTDKDAESAFSSMDTEHRGLSSLTFEGFVGLCLKYDFFKNHPLAIRLRRLNAFFEATEHTAFRASLNTGYTVAGQREVIKALLLSKQESLSTTFEEGDGNGFLYGTYTQDSKKVLEIGVRLLPAAAGYTKVIVYRIGGKTIEFHKWFLDLRRLMKDELLRCEEDTAVKGEPELM

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(3IGO)
?
[Raw transfer]




ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




6PV_A_2(5K00)
MELK_HUMAN
[Raw transfer]




AMP_A_6(4Y5Q)
?
[Raw transfer]




ANP_A_7(3LIJ)
?
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




ANP_A_8(3Q5I)
?
[Raw transfer]




7LV_A_2(5TVT)
MELK_HUMAN
[Raw transfer]




DTQ_A_2(3NYV)
?
[Raw transfer]




BK3_A_6(3MWU)
?
[Raw transfer]




BK1_A_5(3NCG)
?
[Raw transfer]




5RC_A_2(5ES1)
MARK4_HUMAN
[Raw transfer]




STU_A_2(4MVF)
CDPK2_PLAFK
[Raw transfer]




5GA_A_2(5T6A)
?
[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




27 HHSearch 75.4627% -18 * C1 *4YSM - ? -
26 HHSearch 73.4027% -28 - C1 -3NYV 5.9 ?
29 HHSearch 72.2628% -8 - C1 -4Y5Q - ? -
4 PsiBlast_PDB 70.0540%-146 - C1 -5ISO - ? -
23 HHSearch 70.0027% -34 - C1 -5T6A 6.9 ?
22 HHSearch 69.8727% - - C- -4RGJ - CDPK4_PLAF7 -
8 PsiBlast_PDB 69.5738%-150 - C1 -4ZHX - AAPK2_HUMAN -
28 HHSearch 68.6028% -10 - C1 -3MWU - ? -
21 HHSearch 68.4228% -6 - C1 -3Q5I 3.9 ?
7 PsiBlast_PDB 67.9139%-142 - C1 -4CFF - AAPK2_HUMAN -
6 PsiBlast_PDB 66.9439%-142 - C1 -4CFE - AAPK2_HUMAN -
13 PsiBlast_PDB 65.4238%-135 - C1 -4RED - AAPK1_HUMAN -
25 HHSearch 65.0629% -13 - C1 -3LIJ 3.9 ?
10 PsiBlast_PDB 63.9438%-147 - C1 -2YZA - AAPK2_HUMAN -
17 PsiBlast_PDB 63.2030% -35 - C1 -3MWU 7.4 ?
11 PsiBlast_PDB 62.2238%-144 - C1 -3AQV 7.5 AAPK2_HUMAN
18 PsiBlast_PDB 61.8530% -42 - C1 -3NCG 6.1 ?
19 PsiBlast_PDB 60.6530% -42 - C1 -4Y5Q 4.8 ?
24 HHSearch 59.9428% -18 - C1 -4MVF 8.2 CDPK2_PLAFK
12 PsiBlast_PDB 59.0638%-109 - C1 -4D28 - CIPKO_ARATH -
16 PsiBlast_PDB 58.0030% -38 - C1 -3IGO 5.7 ?
15 PsiBlast_PDB 56.0635%-129 - C1 -5ES1 8.4 MARK4_HUMAN
34 HHSearch 54.1234%-145 - C1 -5TVT 8.7 MELK_HUMAN
35 HHSearch 52.8334%-147 - C1 -5K00 8.3 MELK_HUMAN
38 HHSearch 38.3533% -11 - C1 -2Y7J 5.7 PHKG2_HUMAN