@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_36_0970: (2018-07-13 )
MPSSSSVTQPEPEATQGIELPACARKPRDPDFEAPASLHAQSKESNPLVLAPPPCPIICPEHERKMRRTSKSCIVPPPRQRQFMGDVVGLKVPDLVTGWKLPRKSSAHRCFLAAGGDVTVEPQPSSLAGANTKCPVRVPACAGSPTCGPRGENGVLIVSQDDRPAGLVNSRRRYSKESKPAVNGEDGVLLSEYEEDSADAAVRQTVARVRSKNCVLLIVLLVIIIVLAVAGGVGVGFVNKHYTTLTHRMYLESGERIVLNSSVMLLKNYHETLRADARHLLSFVRSSMIGRKPESIAVVQSTLYLPFFEAWSTWLFSSNVPSTHSIYVSMCGEPLANTVDCPFMALTIVCMPNVLQAACFYMHSDEVDRSRMIVNRIEVNESGIPRIGAFYKYVPLKVNYAHYQTNNDYGYFLDQDCAASLDGKVHTTLTIRRQIVVGDLVIICDASGFFERWFQRFEKGLQKKKDSHSVLFVNDGTVLAYDCGAPPRHRHVVSPCSMRLVPHKMGDCMAGKADMIDRIVDTFTVAMQRNKLMKRGGLSKDHVALTERVGDYIVVYQDFLSFRVGDGEPKTVFIAAYAVPLDTSLGRDGFVQISICVVIIIICMFLLGGVAMVAVNQMMRVVEVISQLSTHAATYDTKRMRSVLDRQKPGMLARVITSADIINCEFQHILTNLNAYRPFLPQSLLTKSSYSFSDEPLEPPSLWRSDVALGGSAADDVVVDEDGVPAKPLPRFHLKNTLEGSVSNPVENWRLLQRGFHRTKSTILVVSLSNVALDAGESVDAVNLFVQTVLNHAAIANGVVEVIEFQKIVVSFNSHFPVPRHQEKACLCALAIREEFRDRGCSISIGIASGYNYVGTTGTEQQKARVIMGESVVVAQSLTSLKNYLGCSILATDQVVFEALVTAVAVDVVQLYYEHNHQWVQYGVSEIIGNRYAVLSPDMQLVKSVFKLVRYRQAEEALEAVRRYVDAAAERRETPSWPVRRIHALVERQQLLIRSGYRRQRLQWQALEGDEIIMKHLSEENQSYNSKRQPRLMATVSTATVDSLATLSTHAKAAPCEFGFVSGDVLNAGSEAELARALVGEQSKLSMTRRQLAPIPSSCFSEDALFPVFTVKSSDGDEEERSPGSSRLSSQHNRVTDGNAEASGADSEEMRPVLLVEPQTLRSEERHDVRIGALLPPFTVTTSSPFLPAHDMEYPCTTAGISSMLSNSRRHSALDRQRHIAPTPLHDGTCHASTYATSGALGGVSGGKSSIGASLATTSAGNLGRTADSALKQSSENVAGLAKMHCSYKLPQRIVSVNGQVFHRTSQLVGRGSFGEVYVAISETGSLGAMKVFPLNDNNAPQLIREVETLSQMRHENIVGYDCCAVQDNFFFIICEYLAAGTLGSLIQKLGVIPERAARKYACDMLFGLGYLHQHSWLHCDIKPENILVTSDGTCKLADFGAASLGRSLTDAVSVRGTPRFSAPEAILGTWNQQADIYSFGITVAQMVTGVHPWHKYTEPDHLFVAHYAGEIRHSLQTGMPCAMQPDLPTNLQDKELESAIHRCCEFDPARRPTAEELVTLLS

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




3JA_A_2(4W8D)
STK24_HUMAN
[Raw transfer]




3JB_A_2(4W8E)
STK24_HUMAN
[Raw transfer]




3FE_A_3(4U8Z)
STK24_HUMAN
[Raw transfer]




ADP_B_4(4O27)
STK24_HUMAN
[Raw transfer]




GOL_A_4(5O2C)
WNK3_HUMAN
[Raw transfer]




STU_A_2(3CKX)
STK24_HUMAN
[Raw transfer]




STU_A_3(3PPZ)
CTR1_ARATH
[Raw transfer]




0WB_A_2(4G3F)

[Raw transfer]




77D_A_5(3SLS)
MP2K1_HUMAN
[Raw transfer]




EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]




7 PsiBlast_PDB 67.3429% -35 - C1 -5AX9 - TNIK_HUMAN -
45 Fugue 66.2427% -23 - C1 -4DN5 4.9 M3K14_HUMAN
12 PsiBlast_PDB 66.0530% -8 - C1 -3P86 - CTR1_ARATH -
29 HHSearch 65.5922% -93 - C1 -5T18 - -
11 PsiBlast_PDB 64.9829% -30 - C1 -3SLS 7.4 MP2K1_HUMAN
8 PsiBlast_PDB 63.9929% -36 - C1 -5CWZ - TNIK_HUMAN -
9 PsiBlast_PDB 63.1529% -36 - C1 -5D7A - TNIK_HUMAN -
21 HHSearch 63.0430% -41 - C1 -4G3F 6.4
37 HHSearch 62.8929% -24 - C1 -5J5T - M4K3_HUMAN -
6 PsiBlast_PDB 62.8729% -27 - C1 -2X7F - TNIK_HUMAN -
13 PsiBlast_PDB 61.8030% 4 - C1 -3PPZ 7.7 CTR1_ARATH
25 HHSearch 61.6729% -54 - C1 -4IDV - M3K14_HUMAN -
39 HHSearch 61.0424% -3 - C1 -4B4L - DAPK1_HUMAN -
32 HHSearch 59.0921% -64 - C1 -4Y95 - ? -
40 HHSearch 58.8122% -64 - C1 -5U9D - -
38 HHSearch 58.7924% 1 * C1 *4PF4 - DAPK1_HUMAN -
31 HHSearch 58.6624% -6 - C1 -2X0G - DAPK1_HUMAN -
26 HHSearch 58.3722% -32 - C1 -2Y7J - PHKG2_HUMAN -
42 Fugue 57.3619% -27 - C1 -1KOB - ? -
33 HHSearch 56.6723% -27 - C1 -2WEL 3.4 KCC2D_HUMAN
19 PsiBlast_PDB 53.6432% 2 - C1 -4O27 5.2 STK24_HUMAN
18 PsiBlast_PDB 53.3632% 3 - C1 -3CKX 7.5 STK24_HUMAN
17 PsiBlast_PDB 52.8532% 6 - C1 -4W8D 5.5 STK24_HUMAN
15 PsiBlast_PDB 50.6732% 8 - C1 -4W8E 6.7 STK24_HUMAN
16 PsiBlast_PDB 50.4832% 4 - C1 -4U8Z 6.2 STK24_HUMAN