@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_36_2420: (2018-07-13 )
MRMPSVFTAPSTYMADLEVGAATAYHAHSEAATAGESDTCKPAATTASTRPPLAPHAADADAHNAVELSISSTAVAPAYQLRGELGRGQYGCVYLVEECVRHHLLAVKATYDPIQVAAVRERQRRQERQQQKPSKGSGGCAREAAFSPYAQHEEGHAVVPFPPLLPHFSNEVMCLRECHSPFIVRLEGADKGENGEDLLLMEYVDCGDLRREIRRRCAAGTPFTETEAVFVFLQLCMAVDHLHQLNILHHDLKPENVMLSSTGIIKLGDFGFAKKYREPVSQRVASTGCGTPYYLSPEALRGDRYSLKSEMWALGVILYELLALTGPFAAATRAELRAKVHNSDYAKLPATYSNELRSVCYQLLTLDPDQRPSTRDLFQDNEYLREKLNALRRISECSVNMSTEEKGSMFHSISAALRRKPPSAKGPATASFNLGWGGSCKISSHGHGSARPEAAPKPRVERPAEMTPVARTRSVC

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VGK_A_2(2WQO)
NEK2_HUMAN
[Raw transfer]




4VQ_A_2(2XKC)
NEK2_HUMAN
[Raw transfer]




XK3_A_2(2XK3)
NEK2_HUMAN
[Raw transfer]




5R1_A_2(2XK8)
NEK2_HUMAN
[Raw transfer]




WI2_A_2(2XKE)
NEK2_HUMAN
[Raw transfer]




30E_A_2(2XK7)
NEK2_HUMAN
[Raw transfer]




T3M_A_2(2XKD)
NEK2_HUMAN
[Raw transfer]




BX1_A_2(2XKF)
NEK2_HUMAN
[Raw transfer]




OL2_A_2(2XK4)
NEK2_HUMAN
[Raw transfer]




ATG_A_10(4DN5)
M3K14_HUMAN
[Raw transfer]




EQH_A_2(2XK6)
NEK2_HUMAN
[Raw transfer]




WCX_A_2(2XNP)
NEK2_HUMAN
[Raw transfer]




430_A_2(2XNN)
NEK2_HUMAN
[Raw transfer]




WGZ_A_2(2XNM)
NEK2_HUMAN
[Raw transfer]




ED8_A_2(2XNO)
NEK2_HUMAN
[Raw transfer]




STU_A_13(3BKB)

[Raw transfer]




ADP_A_2(2WQN)
NEK7_HUMAN
[Raw transfer]




ADP_A_2(2W5A)
NEK2_HUMAN
[Raw transfer]




31 HHSearch 73.9831% 0 - C- -2WEL - KCC2D_HUMAN -
42 Fugue 69.2722% -33 - C1 -1KOB - ? -
1 PsiBlast_PDB 67.8036%-147 - C1 -4APC - NEK1_HUMAN -
2 PsiBlast_PDB 67.5936%-143 - C1 -4B9D - NEK1_HUMAN -
24 HHSearch 67.5326% -90 - C1 -3C0I - CSKP_HUMAN -
35 HHSearch 67.3530% -50 - C1 -2X0G - DAPK1_HUMAN -
23 HHSearch 67.1526% -89 * C1 *3C0G - CSKP_HUMAN -
49 Fugue 66.6422% -50 - C1 -4DN5 6.1 M3K14_HUMAN
51 Fugue 64.4721% 15 - C1 -3C4Z - RK_BOVIN -
28 HHSearch 62.5624% -78 - C1 -4XBR - INKA1_HUMAN (first) -
40 HHSearch 62.3223% -89 - C1 -3BKB 7.4
41 HHSearch 61.1923% -90 - C1 -3CBL - -
37 HHSearch 61.1026%-112 - C1 -5K00 - MELK_HUMAN -
26 HHSearch 60.9527% -41 - C1 -2Y7J - PHKG2_HUMAN -
43 Fugue 60.8322% -41 - C1 -1TKI - TITIN_HUMAN -
48 Fugue 60.5820% 18 - C1 -2ACX - GRK6_HUMAN -
27 HHSearch 60.2327% -45 - C1 -2Y7J - PHKG2_HUMAN -
34 HHSearch 59.1226% -56 - C1 -4LQS - CBK1_YEAST -
36 HHSearch 58.7125% -78 - C1 -4G3F - -
22 HHSearch 58.5725% -69 - C1 -1TKI - TITIN_HUMAN -
5 PsiBlast_PDB 55.1534%-122 - C1 -2WQN 3.3 NEK7_HUMAN
17 PsiBlast_PDB 54.4135% -62 - C1 -2XNM 6.1 NEK2_HUMAN
14 PsiBlast_PDB 53.7035% -29 - C1 -2XKD 5.3 NEK2_HUMAN
6 PsiBlast_PDB 53.6735% -59 - C1 -2W5A 5.3 NEK2_HUMAN
15 PsiBlast_PDB 53.5735% -59 - C1 -2XKF 4.4 NEK2_HUMAN
20 PsiBlast_PDB 52.3335% -57 - C1 -2XNP 7.0 NEK2_HUMAN
9 PsiBlast_PDB 51.7435% -55 - C1 -2XK4 5.5 NEK2_HUMAN
13 PsiBlast_PDB 51.2535% -55 - C1 -2XKC 4.7 NEK2_HUMAN
19 PsiBlast_PDB 51.0135% -57 - C1 -2XNO 4.4 NEK2_HUMAN
10 PsiBlast_PDB 50.9735% -52 - C1 -2XK6 4.6 NEK2_HUMAN
8 PsiBlast_PDB 50.8935% -56 - C1 -2XK3 4.6 NEK2_HUMAN
12 PsiBlast_PDB 50.5735% -58 - C1 -2XK8 5.5 NEK2_HUMAN
11 PsiBlast_PDB 50.3635% -60 - C1 -2XK7 4.7 NEK2_HUMAN
18 PsiBlast_PDB 50.0535% -54 - C1 -2XNN 4.3 NEK2_HUMAN
7 PsiBlast_PDB 50.0435% -56 - C1 -2WQO 5.0 NEK2_HUMAN
16 PsiBlast_PDB 48.1535% -25 - C1 -2XKE 4.4 NEK2_HUMAN