@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LMPK: (2018-07-14 )
MTSYGIDGEVEQRYRILRHIGSGAYGVVWCALDRRTGKCVALKKVYDAFGNVQDAQRTYREVMLLQRLRHNPFIVGILDVIRAANDIDLYLVFELIETDLTAIIRKNLLQRDHKRFLTYQLLRTVAQLHAQNIIHRDLKPANIFVSSDCSIKLGDFGLARTFRSGFDNEQEFLDLTDYIATRWYRSPEILVKSRAYSTAMDMWAIGCVIGEMLLGHPLFEGRNTLDQLRLIVEAIGVPSDADVRSLHSPELETLINSLPTPLIFSPLVGNKNLKDSEATDLMMKLIVFNPKRRLSAVEALQHPYVAPFVQPGELEKIQDLDPLVLPLVDEKVYTKEEYKANLYDEIGMRYRHHITDVY

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_4(4QNY)
?
[Raw transfer]




YIX_A_2(2YIX)
MK14_HUMAN
[Raw transfer]




TT4_A_2(4XNE)
MK01_RAT
[Raw transfer]




GOL_B_8(3N9X)
?
[Raw transfer]




DMS_A_7(5VCY)
PMYT1_HUMAN
[Raw transfer]




EDO_A_4(5VCZ)
PMYT1_HUMAN
[Raw transfer]




EDO_A_5(5VCZ)
PMYT1_HUMAN
[Raw transfer]




25 HHSearch 95.0944% -56 - C1 -3OZ6 - ? -
1 PsiBlast_PDB 90.6440% -57 - C1 -3OZ6 - ? -
5 PsiBlast_PDB 82.6737% -35 - C1 -4ZSJ - MK07_HUMAN -
9 PsiBlast_PDB 81.5637% -36 - C1 -4ZSL - MK07_HUMAN -
6 PsiBlast_PDB 81.3737% -32 - C1 -4ZSG - MK07_HUMAN -
22 HHSearch 80.8437% -37 - C1 -5BYZ - MK07_HUMAN -
7 PsiBlast_PDB 80.7937% -41 - C1 -5BYY - MK07_HUMAN -
3 PsiBlast_PDB 80.3937% -37 - C1 -4IC7 - MK07_HUMAN -
31 HHSearch 80.3637% -41 - C1 -4XNE 5.1 MK01_RAT
32 HHSearch 80.3537% -48 - C1 -4YNO - MK13_HUMAN -
8 PsiBlast_PDB 79.5437% -34 - C1 -5BYZ - MK07_HUMAN -
29 HHSearch 78.2738% -40 - C1 -2YIX 6.9 MK14_HUMAN
2 PsiBlast_PDB 78.0237% -44 - C1 -4B99 - MK07_HUMAN -
26 HHSearch 76.6537% -38 - C1 -4ZZN - MK01_HUMAN -
12 PsiBlast_PDB 75.8937% -43 - C1 -2OZA - MK14_MOUSE -
10 PsiBlast_PDB 75.0038% -35 - C1 -4QTB - MK03_HUMAN -
27 HHSearch 74.8535% -42 - C1 -5CI6 - MPK6_ARATH -
30 HHSearch 74.5937% -35 - C- -3COI - MK13_HUMAN -
14 PsiBlast_PDB 74.2137% -41 - C1 -3P79 - MK14_MOUSE -
20 PsiBlast_PDB 73.9537% -38 - C1 -1LEZ - MK14_MOUSE -
24 HHSearch 66.2331% -28 - C1 -3N9X 1.7 ?
38 HHSearch 64.8933% -20 * C1 *4QNY 4.7 ?