@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : MPK12: (2018-07-14 )
MILTKVEGPNAAGNKVYVFGVNDYRLEVPERYNVQHFVGRGAYGFVCSAVDAVTNEPVAIKKVTHLFDDAVDAKRVLREVKLLAYLKHPNILSLKDLFKSPDPVDTYSELYVVTDLMESDMDAILRSPRIRLAAGHGQYFTLQLLCALQYIHSAHVLHRDLKPGNLLTDSECNLKLGDFGLARGIGHDDTMTQYVFTRWYRPPELLLVCKHCNYSADMWAVGCLAAEMFTGKPLFPGKDYINQINLIVELLGIPDLARDLPPSTSTEAIHYLSSLPPSKGKKLEEYAPELRRRFDETTFYDSFDTELEEAIAAEGATIARPQPRPPEEYYAEFVDFIFGLLRYNPEKRRTAKESIAHAWLSDVRGPQETIGGCEAERIYRWDADGTAFTIPQLRHLFIDEIGKFASTRGS

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(4IC7)
MK07_HUMAN
[Raw transfer]




SB4_A_3(4LOO)
MK14_MOUSE
[Raw transfer]




4WE_A_2(5BYZ)
MK07_HUMAN
[Raw transfer]




R4L_A_2(4B99)
MK07_HUMAN
[Raw transfer]




4WE_A_2(5BYZ)
MK07_HUMAN
[Raw transfer]




6SH_A_2(5LAR)
MK14_MOUSE
[Raw transfer]




4WG_A_2(5BYY)
MK07_HUMAN
[Raw transfer]




1N1_A_3(3OHT)
?
[Raw transfer]




GOL_B_7(3N9X)
?
[Raw transfer]




B45_A_4(3GC9)
MK11_HUMAN
[Raw transfer]




B45_A_4(3GC8)
MK11_HUMAN
[Raw transfer]




4R0_A_6(4ZSJ)
MK07_HUMAN
[Raw transfer]




SB5_B_2(1BMK)
MK14_HUMAN
[Raw transfer]




4QX_A_7(4ZSG)
MK07_HUMAN
[Raw transfer]




28 HHSearch 86.8837%-117 - C1 -4YNO - MK13_HUMAN -
27 HHSearch 83.6337%-114 - C- -3COI - MK13_HUMAN -
21 HHSearch 83.2238% -53 * C1 *5BYZ 7.8 MK07_HUMAN
16 PsiBlast_PDB 83.0337%-134 - C1 -1BMK 6.1 MK14_HUMAN
39 HHSearch 82.1437% -24 - C1 -4O2Z - ? -
17 PsiBlast_PDB 81.3137%-139 - C1 -5UOJ - MK14_MOUSE -
29 HHSearch 80.7838%-118 - C1 -2YIX - MK14_HUMAN -
25 HHSearch 78.4837%-117 - C1 -2FST - MK14_HUMAN -
24 HHSearch 77.7630%-114 - C1 -3N9X 2.5 ?
36 HHSearch 77.0838% -69 - C1 -4XNE - MK01_RAT -
31 HHSearch 76.9131%-117 - C1 -4H36 - MK10_HUMAN -
26 HHSearch 75.3438% -40 - C1 -5CI6 - MPK6_ARATH -
30 HHSearch 74.7738% -78 - C1 -4ZZN - MK01_HUMAN -
2 PsiBlast_PDB 73.0637%-132 - C1 -3OHT 6.5 ?
4 PsiBlast_PDB 73.0243% -91 - C1 -4IC7 5.3 MK07_HUMAN
6 PsiBlast_PDB 71.6543% -87 - C1 -5BYZ 7.8 MK07_HUMAN
10 PsiBlast_PDB 71.3442%-108 - C1 -3GC8 8.7 MK11_HUMAN
7 PsiBlast_PDB 70.5543%-100 - C1 -4ZSG 5.7 MK07_HUMAN
8 PsiBlast_PDB 70.3843%-113 - C1 -5BYY 7.2 MK07_HUMAN
3 PsiBlast_PDB 70.0043%-117 - C1 -4B99 7.9 MK07_HUMAN
1 PsiBlast_PDB 69.2543%-118 - C1 -3GC9 9.1 MK11_HUMAN
9 PsiBlast_PDB 68.6344% -96 - C1 -4ZSJ 6.4 MK07_HUMAN
12 PsiBlast_PDB 65.7943%-104 - C1 -4LOO 7.0 MK14_MOUSE
15 PsiBlast_PDB 61.4843%-116 - C1 -5LAR 10.8 MK14_MOUSE