@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : CBPA4_HUMAN: (2018-10-03 )
MRWILFIGALIGSSICGQEKFFGDQVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEHVRDNLY

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0X9_A_3(4Z65)
CBPB1_PIG
[Raw transfer]




VAL_C_6(2BO9)
CBPA4_HUMAN
[Raw transfer]




VAL_C_6(2BO9)
CBPA4_HUMAN
[Raw transfer]




ARG_A_18(3D68)
CBPB2_HUMAN
[Raw transfer]




VAL_A_4(1PCA)
CBPA1_PIG
[Raw transfer]




VAL_A_4(1PCA)
CBPA1_PIG
[Raw transfer]




BTW_A_3(3I1U)
CBPA1_BOVIN
[Raw transfer]




CIT_A_4(3KGQ)
CBPA1_BOVIN
[Raw transfer]




2B8_A_2(4P10)
CBPB2_HUMAN
[Raw transfer]




ASP_B_6(2PCU)
CBPA4_HUMAN
[Raw transfer]




GLU_A_4(1DTD)
CBPA2_HUMAN
[Raw transfer]




GOL_A_7(3QNV)
CBPT_THEVU
[Raw transfer]




GLY_A_4(3LMS)
CBPB2_HUMAN
[Raw transfer]




O2V_B_5(4UF4)
CBPA1_HUMAN
[Raw transfer]




O2V_A_3(4UF4)
CBPA1_HUMAN
[Raw transfer]




O2S_A_3(5OM9)
CBPA1_HUMAN
[Raw transfer]




MRD_A_4(3HLP)
?
[Raw transfer]




GOL_A_12(4IHM)
CBPT_THEVU
[Raw transfer]




TRS_A_7(1ARM)
CBPA1_BOVIN
[Raw transfer]




GLY_B_8(4CPA)
?
[Raw transfer]




MPD_A_5(3HLP)
?
[Raw transfer]




MRD_A_6(3HLP)
?
[Raw transfer]




23 HHSearch 89.00100% -75 - C2 -2BOA - CBPA4_HUMAN -
1 PsiBlast_PDB 88.7999% -75 - C2 -2BOA - CBPA4_HUMAN -
6 PsiBlast_PDB 80.6663% -82 - C2 -1AYE - CBPA2_HUMAN -
25 HHSearch 80.0163% -82 - C2 -1AYE - CBPA2_HUMAN -
8 PsiBlast_PDB 77.5754% -82 - C2 -5OM9 3.6 CBPA1_HUMAN
7 PsiBlast_PDB 77.5554% -83 - C2 -4UF4 3.4 CBPA1_HUMAN
22 HHSearch 77.1953% -83 - C2 -1PCA 3.6 CBPA1_PIG
9 PsiBlast_PDB 76.9852% -83 - C2 -1PCA 3.6 CBPA1_PIG
21 HHSearch 76.9354% -83 - C2 -4UF4 3.5 CBPA1_HUMAN
3 PsiBlast_PDB 76.35100% -75 - C2 -4BD9 - CBPA4_HUMAN -
5 PsiBlast_PDB 75.66100% -71 - C2 -2PCU 3.0 CBPA4_HUMAN
2 PsiBlast_PDB 75.34100% -77 - C2 -4A94 - CBPA4_HUMAN -
4 PsiBlast_PDB 75.03100% -75 - C2 -2BO9 3.8 CBPA4_HUMAN
35 HHSearch 72.4499% -60 - C2 -2BO9 3.8 CBPA4_HUMAN
17 PsiBlast_PDB 68.4361% -82 - C2 -1ARM 3.0 CBPA1_BOVIN
19 PsiBlast_PDB 68.4261% -84 - C2 -3I1U 3.5 CBPA1_BOVIN
20 PsiBlast_PDB 68.1061% -81 - C2 -3HLP 3.3 ?
34 HHSearch 68.0661% -82 - C2 -1M4L - CBPA1_BOVIN -
18 PsiBlast_PDB 67.9361% -80 - C2 -1YME - ? -
14 PsiBlast_PDB 67.6961% -82 - C2 -1ELL - CBPA1_BOVIN -
12 PsiBlast_PDB 67.5461% -83 - C2 -3KGQ 3.8 CBPA1_BOVIN
33 HHSearch 65.8459% -66 - C2 -4CPA 3.1 ?
10 PsiBlast_PDB 64.6467% -44 - C2 -1DTD 3.2 CBPA2_HUMAN
37 HHSearch 59.7645% -41 * C2 *4Z65 3.6 CBPB1_PIG
38 HHSearch 46.2231% 9 - C2 -4IHM 2.8 CBPT_THEVU
36 HHSearch 45.2431% 14 - C2 -3QNV 3.4 CBPT_THEVU