@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : UBP7_HUMAN: (2018-10-04 )
MNHQQQQQQQKAGEQQLSEPEDMEMEAGDTDDPPRITQNPVINGNVALSDGHNTAEEDMEDDTSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGNMSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8QQ_A_7(5N9T)
?
[Raw transfer]




8QQ_A_7(5N9T)
?
[Raw transfer]




9QD_A_3(5VS6)
UBP7_HUMAN
[Raw transfer]




8RN_A_5(5N9R)
UBP7_HUMAN
[Raw transfer]




9QA_A_3(5VSB)
UBP7_HUMAN
[Raw transfer]




8WK_A_3(5NGE)
UBP7_HUMAN
[Raw transfer]




9HS_A_3(5VSK)
UBP7_HUMAN
[Raw transfer]




MLA_B_3(5KYC)
?
[Raw transfer]




2 PsiBlast_PDB 92.19100%-105 - C4 -5J7T - UBP7_HUMAN -
1 PsiBlast_PDB 91.45100%-103 - C4 -5FWI - UBP7_HUMAN -
21 HHSearch 83.9198%-103 - C4 -5JTV - ? -
22 HHSearch 83.0298%-105 - C4 -5JTV - ? -
6 PsiBlast_PDB 75.6499%-121 - C4 -2F1Z - UBP7_HUMAN -
25 HHSearch 74.85100%-114 - C4 -2F1Z - UBP7_HUMAN -
24 HHSearch 73.2899%-115 - C3 -2YLM - -
45 Fugue 73.0099%-115 - C3 -2YLM - -
5 PsiBlast_PDB 72.84100%-115 - C3 -2YLM - -
3 PsiBlast_PDB 72.28100%-116 - C3 -4YOC - -
23 HHSearch 72.0199%-115 - C3 -5C56 - UBP7_HUMAN -
4 PsiBlast_PDB 71.74100%-115 - C3 -5C56 - UBP7_HUMAN -
13 PsiBlast_PDB 68.11100% -90 - C4 -1NBF - UBP7_HUMAN -
7 PsiBlast_PDB 67.5199% -96 - C4 -5N9R 10.8 UBP7_HUMAN
27 HHSearch 67.3799% -99 - C4 -5KYC 3.3 ?
9 PsiBlast_PDB 67.24100% -95 - C4 -4M5W - UBP7_HUMAN -
11 PsiBlast_PDB 67.20100%-105 - C4 -5NGE 11.2 UBP7_HUMAN
26 HHSearch 67.03100% -93 - C4 -5N9T 11.5 ?
10 PsiBlast_PDB 67.03100% -99 - C4 -4M5X - UBP7_HUMAN -
8 PsiBlast_PDB 66.9399% -93 - C4 -5N9T 11.5 ?
15 PsiBlast_PDB 66.48100%-114 - C4 -5VSB 9.7 UBP7_HUMAN
14 PsiBlast_PDB 65.85100% -99 - C4 -5VS6 10.7 UBP7_HUMAN
16 PsiBlast_PDB 64.14100%-105 - C4 -5VSK 8.2 UBP7_HUMAN