@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PTN11_MOUSE: (2018-07-13 )
MTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETLGTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQALLQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIVDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGHEYTNIKYSLVDQTSGDQSPLPPCTPTPPCAEMREDSARVYENVGLMQQQRSFRENTREESDIFFERENTES

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

3LU_A_2(4RDD)
PTN11_HUMAN
[Raw transfer]




B2B_A_2(3MOW)
PTN11_HUMAN
[Raw transfer]




JZG_A_2(3O5X)
PTN11_HUMAN
[Raw transfer]




VN4_A_4(4RI5)
PTN3_HUMAN
[Raw transfer]




2WT_A_2(4PVG)
PTN11_HUMAN
[Raw transfer]




GOL_A_3(4RI5)
PTN3_HUMAN
[Raw transfer]




GOL_A_9(3O4S)
PTN7_HUMAN
[Raw transfer]




EDO_A_4(2BZL)

[Raw transfer]




IPA_A_5(3S3E)
PTP10_DROME
[Raw transfer]




2 PsiBlast_PDB 92.5498% -71 - C1 -5XZR - PTN11_HUMAN -
1 PsiBlast_PDB 92.2898% -83 - C1 -4NWG - PTN11_HUMAN -
9 PsiBlast_PDB 92.0699% -81 - C1 -6BMX - PTN11_HUMAN -
5 PsiBlast_PDB 91.5699% -81 - C1 -6BMR - PTN11_HUMAN -
10 PsiBlast_PDB 90.8099% -85 - C1 -6BMY - PTN11_HUMAN -
7 PsiBlast_PDB 90.7599% -85 - C1 -6BMV - PTN11_HUMAN -
3 PsiBlast_PDB 90.7198% -70 - C1 -4OHI - PTN11_HUMAN -
6 PsiBlast_PDB 89.9299% -85 - C1 -6BMU - PTN11_HUMAN -
4 PsiBlast_PDB 89.8698% -77 - C- -4OHH - PTN11_HUMAN -
8 PsiBlast_PDB 89.7799% -90 - C1 -6BMW - PTN11_HUMAN -
11 PsiBlast_PDB 76.1055% -20 - C1 -3PS5 - PTN6_HUMAN -
12 PsiBlast_PDB 66.9797% -84 - C1 -3B7O - PTN11_HUMAN -
19 PsiBlast_PDB 66.8197% -89 - C1 -4RDD 3.8 PTN11_HUMAN
32 HHSearch 66.4294% -84 - C1 -3B7O - PTN11_HUMAN -
18 PsiBlast_PDB 65.1197% -92 - C1 -3MOW 4.9 PTN11_HUMAN
17 PsiBlast_PDB 64.9897% -92 - C1 -3O5X 4.3 PTN11_HUMAN
13 PsiBlast_PDB 63.9597% -81 - C1 -4PVG 3.3 PTN11_HUMAN
38 HHSearch 60.4938% -93 - C1 -3I36 - ? -
34 HHSearch 58.9837% -89 - C1 -2NZ6 - -
22 Fugue 58.8637% -85 - C1 -1JLN - PTPRR_MOUSE -
37 HHSearch 55.4734%-101 - C1 -4RI5 2.6 PTN3_HUMAN
39 HHSearch 54.8535%-100 - C1 -3S3E 2.3 PTP10_DROME
45 HHSearch 54.8438% -95 - C1 -3O4S 3.0 PTN7_HUMAN
44 HHSearch 50.6832% -34 - C1 -2BZL 2.5