@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PTN6_MOUSE: (2018-07-13 )
MVRWFHRDLSGPDAETLLKGRGVPGSFLARPSRKNQGDFSLSVRVDDQVTHIRIQNSGDFYDLYGGEKFATLTELVEYYTQQQGILQDRDGTIIHLKYPLNCSDPTSERWYHGHISGGQAESLLQAKGEPWTFLVRESLSQPGDFVLSVLNDQPKAGPGSPLRVTHIKVMCEGGRYTVGGSETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKSKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYVKNQLLGPDENSKTYIASQGCLDATVNDFWQMAWQENTRVIVMTTREVEKGRNKCVPYWPEVGTQRVYGLYSVTNSREHDTAEYKLRTLQISPLDNGDLVREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMESISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEIIQSQKGQESEYGNITYPPAVRSAHAKASRTSSKHKEEVYENVHSKSKKEEKVKKQRSADKEKNKGSLKRK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DYV_A_4(6BMY)
PTN11_HUMAN
[Raw transfer]




DZS_A_4(6BMW)
PTN11_HUMAN
[Raw transfer]




DYV_A_3(6BMX)
PTN11_HUMAN
[Raw transfer]




DZS_A_3(6BMV)
PTN11_HUMAN
[Raw transfer]




DZV_A_3(6BMR)
PTN11_HUMAN
[Raw transfer]




DZV_A_4(6BMU)
PTN11_HUMAN
[Raw transfer]




1 PsiBlast_PDB 91.3394% -81 - C1 -3PS5 - PTN6_HUMAN -
18 PsiBlast_PDB 69.4394% -76 - C1 -1FPR - PTN6_HUMAN -
5 PsiBlast_PDB 69.1958% -8 - C1 -5XZR - PTN11_HUMAN -
15 PsiBlast_PDB 69.1493% -73 - C1 -4HJQ - PTN6_HUMAN -
17 PsiBlast_PDB 68.7593% -72 - C1 -4GRZ - PTN6_HUMAN -
2 PsiBlast_PDB 67.2458% -16 - C1 -4NWG - PTN11_HUMAN -
10 PsiBlast_PDB 66.5759% -15 - C1 -6BMX 8.4 PTN11_HUMAN
6 PsiBlast_PDB 66.5659% -12 - C1 -6BMR 7.4 PTN11_HUMAN
9 PsiBlast_PDB 66.4559% -20 - C1 -6BMW 7.6 PTN11_HUMAN
8 PsiBlast_PDB 65.7659% -16 - C1 -6BMV 7.4 PTN11_HUMAN
3 PsiBlast_PDB 65.1559% -10 - C1 -4OHI - PTN11_HUMAN -
11 PsiBlast_PDB 64.3059% -1 - C1 -6BMY 8.3 PTN11_HUMAN
7 PsiBlast_PDB 63.9459% -3 - C1 -6BMU 6.7 PTN11_HUMAN
13 PsiBlast_PDB 62.0994% -87 - C1 -4GS0 - PTN6_HUMAN -
4 PsiBlast_PDB 61.8559% -14 - C- -4OHH - PTN11_HUMAN -
16 PsiBlast_PDB 61.5893% -86 - C1 -4GRY - PTN6_HUMAN -
12 PsiBlast_PDB 59.6294% -77 - C1 -1GWZ - PTN6_HUMAN -
32 HHSearch 56.6757% -82 - C1 -3B7O - PTN11_HUMAN -
53 HHSearch 55.7037%-107 - C1 -2HC1 - -
37 HHSearch 54.3234%-103 - C1 -4RI5 - PTN3_HUMAN -