@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AAPK1_HUMAN: (2018-07-12 )
MRRLSSWRKMATAEKQKHDGRVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDLPKYLFPEDPSYSSTMIDDEALKEVCEKFECSEEEVLSCLYNRNHQDPLAVAYHLIIDNRRIMNEAKDFYLATSPPDSFLDDHHLTRPHPERVPFLVAETPRARHTLDELNPQKSKHQGVRKAKWHLGIRSQSRPNDIMAEVCRAIKQLDYEWKVVNPYYLRVRRKNPVTSTYSKMSLQLYQVDSRTYLLDFRSIDDEITEAKSGTATPQRSGSVSNYRSCQRSDSDAEAQGKSSEVSLTSSVTSLDSSPVDLTPRPGSHTIEFFEMCANLIKILAQ

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CPS_B_12(4CZT)
CIPKN_ARATH
[Raw transfer]




STU_A_4(4QFG)
AAPK1_RAT
[Raw transfer]




STU_A_5(4CFH)
AAPK1_RAT
[Raw transfer]




STU_A_4(4QFR)
?
[Raw transfer]




STU_A_4(4QFS)
AAPK1_RAT
[Raw transfer]




STU_A_4(4REW)
AAPK1_HUMAN
[Raw transfer]




STU_A_4(4RER)
AAPK1_HUMAN
[Raw transfer]




STU_A_4(5KQ5)
?
[Raw transfer]




6PV_A_2(5K00)
MELK_HUMAN
[Raw transfer]




0XZ_A_2(4GV1)
AKT1_HUMAN
[Raw transfer]




B49_C_7(2Y7J)
PHKG2_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




B49_D_8(2Y7J)
PHKG2_HUMAN
[Raw transfer]




7LV_A_2(5TVT)
MELK_HUMAN
[Raw transfer]




TAK_A_2(3AQV)
AAPK2_HUMAN
[Raw transfer]




16X_A_3(2X4F)
MYLK4_HUMAN
[Raw transfer]




CPS_D_23(4CZT)
CIPKN_ARATH
[Raw transfer]




CPS_B_10(4CZU)
CIPKN_ARATH
[Raw transfer]




CPS_C_16(4CZT)
CIPKN_ARATH
[Raw transfer]




2 PsiBlast_PDB 89.8798%-119 - C1 -4RER 9.1 AAPK1_HUMAN
9 PsiBlast_PDB 88.2575%-134 - C1 -5ISO - ? -
8 PsiBlast_PDB 88.1680%-136 - C1 -5EZV - AAPK1_HUMAN (first) -
10 PsiBlast_PDB 81.8475%-125 - C1 -4CFE - AAPK2_HUMAN -
7 PsiBlast_PDB 81.1298%-123 - C1 -4CFH 8.5 AAPK1_RAT
12 PsiBlast_PDB 81.0575%-130 - C1 -4ZHX - AAPK2_HUMAN -
4 PsiBlast_PDB 80.7489%-125 - C1 -4QFR 10.3 ?
3 PsiBlast_PDB 80.4389%-121 - C1 -4QFG 9.6 AAPK1_RAT
21 HHSearch 80.1499%-138 - C1 -4RED - AAPK1_HUMAN -
11 PsiBlast_PDB 80.0875%-124 - C1 -4CFF - AAPK2_HUMAN -
1 PsiBlast_PDB 79.8999%-104 - C1 -4REW 8.9 AAPK1_HUMAN
5 PsiBlast_PDB 79.8889%-126 - C1 -4QFS 9.7 AAPK1_RAT
6 PsiBlast_PDB 78.9289%-124 - C1 -5KQ5 9.5 ?
22 HHSearch 74.0299%-127 - C1 -4RED - AAPK1_HUMAN -
13 PsiBlast_PDB 73.8698%-127 - C1 -4RED - AAPK1_HUMAN -
16 PsiBlast_PDB 71.8090%-132 - C1 -3AQV 8.2 AAPK2_HUMAN
34 HHSearch 71.0090%-133 - C1 -3AQV 8.2 AAPK2_HUMAN
15 PsiBlast_PDB 66.7190%-140 - C1 -2YZA - AAPK2_HUMAN -
30 HHSearch 61.5141%-117 - C1 -2QNJ - MARK3_HUMAN -
31 HHSearch 60.5542%-133 - C1 -5TVT 8.7 MELK_HUMAN
29 HHSearch 57.7742%-124 - C1 -5K00 10.8 MELK_HUMAN
20 PsiBlast_PDB 51.0745% -66 - C1 -4CZT 2.3 CIPKN_ARATH
23 HHSearch 48.7335% -48 - C1 -4CZT 5.3 CIPKN_ARATH
24 HHSearch 47.7334% -49 - C1 -4CZU 5.4 CIPKN_ARATH
37 HHSearch 46.2238% -37 - C1 -4GV1 7.4 AKT1_HUMAN