@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : AP2A1_HUMAN: (2018-07-12 )
MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNKYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMCLALHCIANVGSREMGEAFAADIPRILVAGDSMDSVKQSAALCLLRLYKASPDLVPMGEWTARVVHLLNDQHMGVVTAAVSLITCLCKKNPDDFKTCVSLAVSRLSRIVSSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDAAVKGRLVECLETVLNKAQEPPKSKKVQHSNAKNAILFETISLIIHYDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIDTVINALKTERDVSVRQRAADLLYAMCDRSNAKQIVSEMLRYLETADYAIREEIVLKVAILAEKYAVDYSWYVDTILNLIRIAGDYVSEEVWYRVLQIVTNRDDVQGYAAKTVFEALQAPACHENMVKVGGYILGEFGNLIAGDPRSSPPVQFSLLHSKFHLCSVATRALLLSTYIKFINLFPETKATIQGVLRAGSQLRNADVELQQRAVEYLTLSSVASTDVLATVLEEMPPFPERESSILAKLKRKKGPGAGSALDDGRRDPSSNDINGGMEPTPSTVSTPSPSADLLGLRAAPPPAAPPASAGAGNLLVDVFDGPAAQPSLGPTPEEAFLSELEPPAPESPMALLADPAPAADPGPEDIGPPIPEADELLNKFVCKNNGVLFENQLLQIGVKSEFRQNLGRMYLFYGNKTSVQFQNFSPTVVHPGDLQTQLAVQTKRVAAQVDGGAQVQQVLNIECLRDFLTPPLLSVRFRYGGAPQALTLKLPVTINKFFQPTEMAAQDFFQRWKQLSLPQQEAQKIFKANHPMDAEVTKAKLLGFGSALLDNVDPNPENFVGAGIIQTKALQVGCLLRLEPNAQAQMYRLTLRTSKEPVSRHLCELLAQQF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IHP_A_5(2VGL)
AP2A2_RAT
[Raw transfer]
4 PsiBlast_PDB 99.4591%-158 - C1 -2JKT - AP2A2_MOUSE -
3 PsiBlast_PDB 98.7891%-158 - C1 -2JKR - AP2A2_MOUSE -
22 HHSearch 98.7692%-158 - C1 -2JKR - AP2A2_MOUSE -
5 PsiBlast_PDB 97.2691%-158 - C1 -4UQI - AP2A2_RAT -
21 HHSearch 95.0892%-153 - C1 -2VGL - AP2A2_RAT -
1 PsiBlast_PDB 94.8591%-153 - C1 -2VGL 3.8 AP2A2_RAT
2 PsiBlast_PDB 94.1291%-147 - C1 -2XA7 - AP2A2_RAT -
26 HHSearch 64.6930% -70 - C1 -4HMY - AP1G1_MOUSE -
27 HHSearch 63.9230% -68 - C1 -4P6Z - AP1G1_MOUSE -
42 Fugue 63.6129% -76 - C1 -1W63 - AP1G1_MOUSE -
19 PsiBlast_PDB 62.6530% -71 - C1 -1W63 - AP1G1_MOUSE -
20 PsiBlast_PDB 62.5130% -69 - C1 -4HMY - AP1G1_MOUSE -
18 PsiBlast_PDB 62.5130% -70 - C1 -4P6Z - AP1G1_MOUSE -
6 PsiBlast_PDB 51.7892% - - C1 -4NEE - AP2A2_RAT -
30 HHSearch 50.1919% -56 - C1 -1W63 - AP1B1_RAT -
48 Fugue 50.0018% -70 - C1 -2VGL - AP2B1_HUMAN -
31 HHSearch 49.7519% -50 - C1 -2VGL - AP2B1_HUMAN -
10 PsiBlast_PDB 49.0872%-103 - C2 -3HS8 - -
25 HHSearch 48.9872%-103 - C2 -3HS8 - -
7 PsiBlast_PDB 47.7570%-105 - C2 -1W80 - -