@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GRP78_HUMAN: (2018-07-13 )
MKLSLVAAMLLLLSAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKREGEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGDQDTGDLVLLDVCPLTLGIETVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAGPPPTGEEDTAEKDEL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(5TKY)
SSB1_CHATD
[Raw transfer]




ATP_B_22(6ASY)
BIP_HUMAN
[Raw transfer]




ATP_A_3(3LDL)
BIP_HUMAN
[Raw transfer]




7DT_A_3(5EXW)
BIP_HUMAN
[Raw transfer]




ATP_A_3(5F1X)
BIP_HUMAN
[Raw transfer]




7DD_A_5(5EX5)
BIP_HUMAN
[Raw transfer]




ATP_A_8(6ASY)
BIP_HUMAN
[Raw transfer]




ADP_A_5(5EVZ)
BIP_HUMAN
[Raw transfer]




ADP_A_2(6EOF)
BIP_CRIGR
[Raw transfer]




ADP_A_2(6EOF)
BIP_CRIGR
[Raw transfer]




ACP_A_3(5F2R)
BIP_HUMAN
[Raw transfer]




ANP_A_3(3LDO)
BIP_HUMAN
[Raw transfer]




ADP_A_3(3IUC)
BIP_HUMAN
[Raw transfer]




ATP_B_5(5TKY)
SSB1_CHATD
[Raw transfer]




ADP_A_4(6EOE)
BIP_CRIGR
[Raw transfer]




ADP_A_2(2V7Y)
DNAK_GEOKA
[Raw transfer]




ADP_B_14(3C7N)
HSP7C_BOVIN
[Raw transfer]




3P1_A_3(3LDP)
BIP_HUMAN
[Raw transfer]




DTP_A_3(5EY4)
BIP_HUMAN
[Raw transfer]




DTP_A_5(5F0X)
BIP_HUMAN
[Raw transfer]




DTP_A_5(5F0X)
BIP_HUMAN
[Raw transfer]




33 HHSearch 95.26100% -57 - C1 -6ASY 9.7 BIP_HUMAN
1 PsiBlast_PDB 94.9098% -57 - C1 -6ASY 9.5 BIP_HUMAN
2 PsiBlast_PDB 93.5198% -59 - C1 -5E84 - BIP_HUMAN -
7 PsiBlast_PDB 85.8999% -60 - C1 -6EOF 7.6 BIP_CRIGR
4 PsiBlast_PDB 85.7499% -58 - C1 -6EOB - BIP_CRIGR -
40 HHSearch 85.68100% -60 - C1 -6EOF 7.6 BIP_CRIGR
5 PsiBlast_PDB 85.1699% -59 - C1 -6EOC - BIP_CRIGR -
3 PsiBlast_PDB 84.8999% -59 - C1 -5O4P - BIP_CRIGR -
6 PsiBlast_PDB 84.8699% -60 - C1 -6EOE 7.6 BIP_CRIGR
14 PsiBlast_PDB 78.16100% -73 - C1 -5F1X 8.9 BIP_HUMAN
16 PsiBlast_PDB 78.11100% -72 - C1 -3LDL 8.7 BIP_HUMAN
17 PsiBlast_PDB 77.21100% -74 - C1 -3LDN - BIP_HUMAN -
19 PsiBlast_PDB 77.12100% -74 - C1 -3LDP 5.9 BIP_HUMAN
11 PsiBlast_PDB 77.09100% -67 - C1 -5EXW 9.5 BIP_HUMAN
18 PsiBlast_PDB 76.21100% -68 - C1 -3LDO 9.3 BIP_HUMAN
13 PsiBlast_PDB 75.90100% -65 - C1 -5F0X 6.1 BIP_HUMAN
9 PsiBlast_PDB 75.86100% -68 - C1 -5EVZ 7.5 BIP_HUMAN
8 PsiBlast_PDB 75.82100% -75 - C1 -3IUC 7.9 BIP_HUMAN
44 HHSearch 75.6899% -66 - C1 -5F0X 6.1 BIP_HUMAN
15 PsiBlast_PDB 75.28100% -67 - C1 -5F2R 8.5 BIP_HUMAN
12 PsiBlast_PDB 75.21100% -67 - C1 -5EY4 6.4 BIP_HUMAN
10 PsiBlast_PDB 75.20100% -66 - C1 -5EX5 7.6 BIP_HUMAN
20 PsiBlast_PDB 69.1468% -3 - C1 -3C7N 5.2 HSP7C_BOVIN
32 HHSearch 68.4454% 9 - C1 -5TKY 9.0 SSB1_CHATD
31 HHSearch 65.8454% 23 - C1 -5TKY 8.9 SSB1_CHATD
42 HHSearch 62.8456% -19 - C1 -2V7Y 7.7 DNAK_GEOKA