@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q53SD4_HUMAN: (2017-06-03 )
CYWGVMDRYEAEALLEGKPEGTFLLRDSAQEDYLFSVSFRRYNRSLHARIEQWNHNFSFDAHDPCVFHSSTVTGLLEHY

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_P_2(2VIF)
KIT_HUMAN
[Raw transfer]

-

172 HHSearch 81.9792%-131 - C6 -2IZV - -
1 PsiBlast_PDB 81.9792%-131 - C6 -2IZV - -
193 Fugue 76.0092% -26 - C6 -2IZV - -
179 HHSearch 59.3044% -94 - C6 -2VIF - KIT_HUMAN -
177 HHSearch 58.9827%-164 - C- -3EAZ - CSK_HUMAN -
2 PsiBlast_PDB 58.0945% -85 - C6 -2VIF 9.2 KIT_HUMAN
185 HHSearch 57.8727%-131 - C6 -2CRH - -
186 HHSearch 57.0429%-148 - C6 -2Y3A - -
184 HHSearch 54.0221%-182 * C6 *3US4 - -
175 HHSearch 51.0732% -82 - C6 -1JU5 - CRK_HUMAN -
187 HHSearch 50.7821%-117 - C6 -2DLZ - -
176 HHSearch 50.2321%-131 - C6 -2LNW - -
192 HHSearch 50.1228% -54 - C6 -4L23 - -
182 HHSearch 49.8927% -44 - C6 -2IUG - -
174 HHSearch 49.2735% 0 - C- -2C9W - SOCS2_HUMAN -
189 HHSearch 48.2625% -57 - C6 -2OZO - ZAP70_HUMAN -
15 PsiBlast_PDB 47.1934% -13 - C5 -2CIA - -
18 PsiBlast_PDB 46.7933% -37 - C5 -2CI9 - NCK1_HUMAN -
183 HHSearch 45.7925% -89 - C6 -2MK2 - SHIP2_HUMAN -
24 PsiBlast_CBE 45.7933% -46 - C5 -2CI9 - -